Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1029 ATGGCGACTCAGCTCTTCTCTCGCTCTCTCCCTAAAACCCTAATATTGGCTGCTAAGTTCTCTCGTTCCTTTCTCACTGCCACCGGAGCCGCCTCTTCTCACTCCTCTTTCTCCCTTCTGCGCCGCCTCCGTCCCCTCGCTGCTATACTCGCCGCTGATTTCCGCTGTCTTTCTGCGTCTCCGAGCGTGAGGGAGTTTGCTACTCGTGCCACTTCGTCGTCTCTCAATGATCCGAATCCTAACTGGTCTAATCGCCCACCCAAGGAGACCATATTGCTTGATGGGTGTGATTTTGAACACTGGCTCGTTGTCATGGAGAAGCCAGATGAGCAACTCACGAGGGATGAGATTATCGACAGCTATATCAAAACCCTTGCCATGGTTGTCGGAAGTGAGGAAGAAGCTAGGATGAAGATATACTCTGTTTCAACCAGATGCTACTTTGCATTTGGGTGCCTTGTTTCTGAAGAGCTTTCTTACAAAATCAAAGAGCTGCCTAAGGTTCGTTGGGTCCTTCCTGATTCATACTTGGATGTTAAGAATAAAGATTATGGAGGGGAGCCTTTTATTAACGGACAAGCTGTTCCGTACGACCCGAAGTACCACGAGGAATGGATTAGAAACAATGAGAGAGCAAAAGATAGGAATAGGCGCAGTGAAAGACCTCGCAATTTTGATAGGTCAAGAAACTTTGAAAGGAGGAGGGAAAACATGCAAAATAGAGAATTTCCAAATGCTTCGGCGAATGGACCAAACATGGGTGCACCACCAGATCCGAGTAGGATGCCTCCCAACAACTTTAGTCATAGCATGCCTCCTCACAACGGTGCTGGAATGCCCCAAGGCAACTATCCGGGTGGACCACCGCCGCCGCCGCCAGTGAACAACTTTAACGGACCACCACCACCACCGAGCAACTTTAACAGACCACCACCACCGAACAACTTTAACAGACCACCGCCACCGCCACCAAACAACTTTAATGGACCACCGCTGCCGCCACCGAACAACTTTAACGGACCACCGCCGCCACCACCACACAACTATGCACCACCACCACCAAACCCCGGAGGAGCACAACACAACTATGGAGGGCCACAGCCGAACAACTATTGGGGAGCACCACAGCCAAACAACTATGGACCTTCAAACTCCGGTGAGCCGCCTGCACAGAACAGCTATGGAGGGGTGCAATCTAACGCTGGTGGATGGTCTAGTAATTTGCGTAACAATCAACAAGAATAG 1245 50.44 MATQLFSRSLPKTLILAAKFSRSFLTATGAASSHSSFSLLRRLRPLAAILAADFRCLSASPSVREFATRATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPDEQLTRDEIIDSYIKTLAMVVGSEEEARMKIYSVSTRCYFAFGCLVSEELSYKIKELPKVRWVLPDSYLDVKNKDYGGEPFINGQAVPYDPKYHEEWIRNNERAKDRNRRSERPRNFDRSRNFERRRENMQNREFPNASANGPNMGAPPDPSRMPPNNFSHSMPPHNGAGMPQGNYPGGPPPPPPVNNFNGPPPPPSNFNRPPPPNNFNRPPPPPPNNFNGPPLPPPNNFNGPPPPPPHNYAPPPPNPGGAQHNYGGPQPNNYWGAPQPNNYGPSNSGEPPAQNSYGGVQSNAGGWSSNLRNNQQE 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24602160 24604599 - CaPI482276_07g010290.1 Cam07g1029 131322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1029 414 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 4 239 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Cam07g1029 414 MobiDBLite consensus disorder prediction 362 414 - -
Cam07g1029 414 MobiDBLite consensus disorder prediction 212 414 - -
Cam07g1029 414 Pfam Multiple organellar RNA editing factor 1, MORF domain 98 189 IPR054059 -
Cam07g1029 414 MobiDBLite consensus disorder prediction 283 359 - -
Cam07g1029 414 MobiDBLite consensus disorder prediction 212 240 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1029 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0379 Cam-Chr5:3496243 Cam07g1029 Cam-Chr7:24602160 1.60E-23 dispersed
Cam06g0492 Cam-Chr6:7036647 Cam07g1029 Cam-Chr7:24602160 2.50E-50 dispersed
Cam07g1029 Cam-Chr7:24602160 Cam07g1031 Cam-Chr7:24611156 4.50E-144 dispersed
Cam07g1029 Cam-Chr7:24602160 Cam07g1030 Cam-Chr7:24608800 2.60E-11 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g129 . . . . Bpe09g00253 . Bma10g00477 . Cmo16g00455 Cmo04g00610 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1029 Cone15ag1014 . . . . Blo07g00964 Blo10g00738 Bda05g00787 . . Bpe03g00852 . . . . . Cma04g00570 Cma16g00423 Car04g00540 Car16g00387 Cpe14g00356 Cpe01g00515 . . . . . . . Cla07g00955 Cam07g1029 Cec07g1099 Cco07g1079 Clacu07g0998 Cmu07g0994 Cre07g1369 . . Chy07g00969 Cme07g01340
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002481 2 4 2 1 2 3 2 2 2 2 1 3 2 5 2 2 3 2 2 3 2 1 1 1 1 1 1 2 1 2 60