Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1061 ATGTCTGTCATATGCCAGAGTCTTGATTTTGGAAGGCATGTTTTGGATTATGTTGCTTGTGGTTGTTCCTCCAATACTCCATTGGATCCACATACGGTTAGGAGTCATGTCAAACTGTCTACTAAGGACATTACTGGTGGTCCTCAACCATTCTTCGAACTGAGGAAGGAGTCCAGAAGCCCAATCTCATCGACAAGTTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTCCTGTCTATGGTTGGTAAGGAGAACCCAGCCTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTGGTATTCCTGGTGTCAAGAGCAACGGCGGGATTGGTTGGGTTAGAGGAACTCACTGTGGAGCATCGGAGTTTGGCAGAGATCATTGAGATGATCCACACTGCAAGCTTGATACATGATGATGTCTTAGATGATAGTGATATGAGGAGAGGGAAGGAAACCTTGCATCAATTATACGGTACCAGAGTGGCAGTGCTGGCTGGAGATTTCATGTTTGCACAGTCATCGTGGTGTCTTGCTAATCTTGAAAACCTTGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCGTCAAGCCTGTTTGATTGTGAGGTTGAGCTGGATGAATATTTGATCAAAAGCTATTATAAAACAGCTTCCTTGATTGCTGCTAGTACCAAAGGTGCTGCGATCTTTAGTGGGGTTGATCGGGATATGACCGAGAAAATGTACGAGTATGGAAAGAATCTTGGTCTCTCATTCCAAATTGTCGATGACATATTGGACTTTACACAATCAACAAAGCAGCTTGGGAAGCCAGCGGGAAGTGATCTGGCTAAAGGAAATCTGACAGCCCCAGTTATATTTGCTCTGGAGAGAGAGCCGAAATTGAAAGACATTATCGAATCAGAATTCAATGAGCCGGGGTCTCTCGAAGAAGCCATCCGCATAGTCAAGAGCAGTGGTGGCATTGAAAGAGCGCAGGAATTAGCTAAACAAAAGGCTGATCTTGCTATCCAAAACCTACAATGCCTTCCACAAAGTACCTTTCGGTTAGCGCTCGAGGATATGTCTGCAGCAATCCCTCGGAAATCACAAATAGAGACTACCTTTTGCCGTCACACAAGCTCTGATGCTACGGGCCGGCCCAATATTCCGGCCCATCTCTTCAACTTCGTCTTCACCAAAGATCCATCGACGACGCTTTCTCCAAGCGAATTACAGAGAAAGTTCGACTCGAGTGAAAAGAGAGGTTCCATGGGACAGTGGAGAAGCATAGTGAAGGAGGCAATCGATCGCTCAGCCATTATAGCCAAGTTCCTCTGCTTGCTTCACGTGTATGGCCCTAGCATGCTCCCAACCTTGAATCTGACCGGCGATGTTCTTTTGGCCGAGCACGTGTCGCACCGAGTGGGCAGGGTTGGCCCTGGCGACGTTGTGCTGGTTCGCTCTCCTCTGAACCCGAGGAAGACGTTGACGAAGCGCATTCTGGGCGTCGAGGGTGATAAGGTCAATTTCTTTCCGGACCCTGCCAATTCCAATCGGTATCAGTCGGCTGTGGTTCCGAAAGGGCATGTGTGGATTCAAGGAGATAATGTGGAAAGTGTTTTTGAGAGTCTGGCCACCAGATTGTTTTGGACCATTGGAACAATGAACTCAGATATACCGAACTTAAAAGATAAATTGCTGGACTTCATTTCGTGGCTATTCTAA 1773 46.53 MSVICQSLDFGRHVLDYVACGCSSNTPLDPHTVRSHVKLSTKDITGGPQPFFELRKESRSPISSTSLFEVVADDLQKLNQNLLSMVGKENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRSLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELDEYLIKSYYKTASLIAASTKGAAIFSGVDRDMTEKMYEYGKNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPKLKDIIESEFNEPGSLEEAIRIVKSSGGIERAQELAKQKADLAIQNLQCLPQSTFRLALEDMSAAIPRKSQIETTFCRHTSSDATGRPNIPAHLFNFVFTKDPSTTLSPSELQRKFDSSEKRGSMGQWRSIVKEAIDRSAIIAKFLCLLHVYGPSMLPTLNLTGDVLLAEHVSHRVGRVGPGDVVLVRSPLNPRKTLTKRILGVEGDKVNFFPDPANSNRYQSAVVPKGHVWIQGDNVESVFESLATRLFWTIGTMNSDIPNLKDKLLDFISWLF 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 24967239 24975372 + CaPI482276_07g010610.1 Cam07g1061 131354

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1061 590 Pfam Polyprenyl synthetase 92 337 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cam07g1061 590 SFLD Isoprenoid Synthase Type I 94 375 - -
Cam07g1061 590 CDD Trans_IPPS_HT 89 381 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Cam07g1061 590 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 56 379 - GO:0004659(PANTHER)|GO:0008299(PANTHER)|GO:0009507(PANTHER)|GO:0010236(PANTHER)
Cam07g1061 590 Pfam Signal peptidase, peptidase S26 462 526 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cam07g1061 590 CDD S26_SPase_I 466 546 IPR019533 GO:0004252(InterPro)|GO:0006465(InterPro)
Cam07g1061 590 ProSitePatterns Polyprenyl synthases signature 2. 270 282 IPR033749 -
Cam07g1061 590 Gene3D Umud Fragment, subunit A 457 573 - -
Cam07g1061 590 Gene3D Farnesyl Diphosphate Synthase 62 384 IPR008949 -
Cam07g1061 590 SUPERFAMILY Terpenoid synthases 65 380 IPR008949 -
Cam07g1061 590 SUPERFAMILY LexA/Signal peptidase 464 553 IPR036286 -
Cam07g1061 590 ProSitePatterns Polyprenyl synthases signature 1. 148 162 IPR033749 -
Cam07g1061 590 PRINTS Bacterial leader peptidase 1 (S26A) family signature 541 560 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cam07g1061 590 PRINTS Bacterial leader peptidase 1 (S26A) family signature 512 524 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cam07g1061 590 PRINTS Bacterial leader peptidase 1 (S26A) family signature 459 475 IPR000223 GO:0006508(InterPro)|GO:0008236(InterPro)|GO:0016020(InterPro)
Cam07g1061 590 NCBIfam solanesyl diphosphate synthase 62 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1061 K05356 - - csv:101214140 680.633
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2500 Cam-Chr1:36662196 Cam07g1061 Cam-Chr7:24967239 4.30E-30 dispersed
Cam01g2542 Cam-Chr1:37011715 Cam07g1061 Cam-Chr7:24967239 5.20E-63 dispersed
Cam02g1400 Cam-Chr2:26665731 Cam07g1061 Cam-Chr7:24967239 5.50E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g11 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00987 Cam07g1061 Cec07g1132 Cco07g1109 Clacu07g1033 Cmu07g1026 Cre07g1404 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38