Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1081 ATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACTGAGTCAGAAGCGGCGGAACGGCCCCCCACTCGGTCTCAAAAACCTAGGCAATACCTGCTATCTCAACAGCGTCCTTCAGTGTCTAACTTACACCCCTCCTCTTGCCAATTTCTGCCTCCGCAACCAGCACTCCTCTCTCTGCGATTCTGCTTCCTCCGACGCCGACCGAAAGCGCGAATGTCCGTTTTGCATTCTGGAGAGGCGGATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTTTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCATTTTCGCTTGGGCCGTCAGGAGGACGCCCACGAGTTCCTTCGCTATGTCATCGACGCTTGTCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAAATGGAAGCTACAATGGTGGAGCTACCAGTGGAAGCTCCACGGTCGTGAAGGAAATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGACGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAATTTTAGATGGCAGTAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTCGTGGCTAGGAAGCAGATGTCAATACTCCAAGCACCAAATATACTTGTCATCCAATTGAAGAGATTTGAAGGCATATTTGGTGGTAAGATTGACAAGGCCATTGCGTATGAGGAGAGTTTGCAGCTTTCAAATTTCATGTGCAAAGGAAGTCAGGATTTGCGGCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCTTCTCTGCAGAATCCGGACATTATTATGCATATATCAAGGATGCATCGGGTAGGTGGTATTGCTGCAATGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTTTTGTCAGAAAAGGTTTATATCCTCTTTTTCTCTCGTACAAACCAAAGGCCAGTAACTGCCAGCACAGCTCTTGCTTCCAATGGTGTAAAATCCCATGAATGTAATGGCAGTGATGGATCCAAAATCTCAAAACCTTCAGTTGTAACTAAAACAACAACACAGACAAGATCCCATGTTGAGCAATCTTCTCGGAAGGAACTTTCAAATTTGTCTAAGGTAGATAAACCAACTTTCAGCCCACGAGGAAAGTCTAATATGAATGGACATTCTGATATGAATGGGCATTCTAATTCCATACGAGCTCCTTCCACCATTAACGGAAAGATTGTTCTTGAGAAGGATCAATCCATCAAGGAGAATGGGAAAGAGAATGTTAACTCGTTGCCTCTGGAAAATGGTGCAAGACGTAAATCTTCTGTTGGGAATGGAAATAGCAGGAAAAATTTTGAAGTTGATCATGATGTCACTGAGAGAGGACAAAAACCTGTTTTAATGAATAGTAATGGTAATGGTGGGAGTATGGGAATGAAAGCAGATAAACATGACCTATGTGGCAGTAATCCTATGAATAACAAGTTCACTGCAGGAAGAGGGTCTTGTCATGATGAAGTGGATAATTCAGTCAACTGCTCCTCTGAGGTCAAAAGGGCCAAAAGAAAGTCAGACTTCTGTATCTTGTTTCAACAGGATGCTCAATCTCGGCAAAGAGTTGAAGAGCTGAAACAAAATCTCAAGAGAGAAACTTTATCAGTTTTACGATCATGCGGTTGGTTAGAGGAGGTCTTCAGTTGCATGCGTTCAAGGAAGAGATTATGTTTACGGGAAATGGACAGCACCCCAAGTAGTAATGATTTAAAGAAATTGCTGATTGCAGATGCCAAACAAAAGTTTATTTCACGGATACCAGAACCTCTAAAAGAAGACCTTATTAAAAAGCTTCAACTATTCAGCCAAGAAAAGATTTTTGGCTTACAGTCATTATGTCGTGGATGCATTACGAATTTTCCTTCAAAGAAGAAATATAGGCAAACTGCGGGAGTGAAACATATCTATGCTTTCATTGAGTTAACATTTTTACCATCATTCGAAAGTCGTTCGGGATGGAGCCGTTCTGAAAGTAGAAGGCAAACAGCTGAGACTCAGTTGATGATGTGCGTTAAGGACATCGTGAGTCTGTCATCTTATCCAACCACCCAGAAGTGCAAGGGGTTGCAGCTTCTGCCTGCTTCTTCTCCAAACTCAAATGAGGCATTTTCCTCAACAATGGAAGAATAG 2256 43.22 MALQLQMSWQPSLLSQKRRNGPPLGLKNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSDADRKRECPFCILERRIVRSLSLDLTLDSPFKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRNGSYNGGATSGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEILDGSNKYKCDNCKKLVVARKQMSILQAPNILVIQLKRFEGIFGGKIDKAIAYEESLQLSNFMCKGSQDLRPEYKLFGTIVHSGFSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTASTALASNGVKSHECNGSDGSKISKPSVVTKTTTQTRSHVEQSSRKELSNLSKVDKPTFSPRGKSNMNGHSDMNGHSNSIRAPSTINGKIVLEKDQSIKENGKENVNSLPLENGARRKSSVGNGNSRKNFEVDHDVTERGQKPVLMNSNGNGGSMGMKADKHDLCGSNPMNNKFTAGRGSCHDEVDNSVNCSSEVKRAKRKSDFCILFQQDAQSRQRVEELKQNLKRETLSVLRSCGWLEEVFSCMRSRKRLCLREMDSTPSSNDLKKLLIADAKQKFISRIPEPLKEDLIKKLQLFSQEKIFGLQSLCRGCITNFPSKKKYRQTAGVKHIYAFIELTFLPSFESRSGWSRSESRRQTAETQLMMCVKDIVSLSSYPTTQKCKGLQLLPASSPNSNEAFSSTMEE 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25268862 25278278 + CaPI482276_07g010810.1 Cam07g1081 131374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1081 751 CDD Peptidase_C19E 23 338 - -
Cam07g1081 751 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 282 300 IPR018200 GO:0004843(InterPro)
Cam07g1081 751 MobiDBLite consensus disorder prediction 399 431 - -
Cam07g1081 751 FunFam Ubiquitin carboxyl-terminal hydrolase 25 18 342 - -
Cam07g1081 751 SUPERFAMILY Cysteine proteinases 17 339 IPR038765 -
Cam07g1081 751 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18 402 IPR050164 GO:0004843(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0016579(PANTHER)
Cam07g1081 751 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843(InterPro)
Cam07g1081 751 Pfam Ubiquitin carboxyl-terminal hydrolase 25 337 IPR001394 GO:0004843(InterPro)|GO:0016579(InterPro)
Cam07g1081 751 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 340 IPR028889 -
Cam07g1081 751 MobiDBLite consensus disorder prediction 356 501 - -
Cam07g1081 751 MobiDBLite consensus disorder prediction 356 385 - -
Cam07g1081 751 Gene3D Cysteine proteinases 18 342 - -
Cam07g1081 751 MobiDBLite consensus disorder prediction 448 473 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1081 K11855 - - csv:101218797 1185.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam02g1447 Cam-Chr2:27347810 Cam07g1081 Cam-Chr7:25268862 6.70E-24 dispersed
Cam02g2327 Cam-Chr2:35823833 Cam07g1081 Cam-Chr7:25268862 1.60E-08 dispersed
Cam07g1081 Cam-Chr7:25268862 Cam11g1476 Cam-Chr11:27495112 3.70E-56 dispersed
Cam07g1081 Cam-Chr7:25268862 Cam08g1632 Cam-Chr8:22537546 2.60E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41