Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1102 ATGGAGTTGGCAAAGACGACGACGATGAAGACAAAGACGAAGAAGTTGGTTTTGTTGATTGCAGTTTCAGTTATGGTGGTTGTGATATCACAGCAATTTTGGATGCCATCTTTTGACTTGAATCATCTTTGGAGAACTGTTTCTTACCATGGCTTTACAAACAATTATCCAAGAAACAACGATAAATTCATCGATGGCCTTCTTCCTCCAGGCTTTGACCAAAAATCCTGCTTAAGCCGATACCAACTAAATCTCTACAAAAAACCCTCTCCTCACTACCCCTCTTTCCCTCTCCTCTCAAAGCTTCGTCGCTATGAAGCTCTCCACAGCCGTTGCGGCCCCAATTCCCCGTCATTCCGCCGAGCTCTCGTCGGTCTTACCTCACCCACAAACTCCACATCCTCATCCGAGGACGATTGCAAATATCTCGTCATTTTAACCCGCGATGGCCTTGGCAACCGAATCCTCGCCCTTCTCTCTGCCTTCTTCTATGCCCTAATCGCCAATCGCGTCATTCTAATCGACCAAGCCAACATTCTTGATGATCTATTCTGTGAGCCCTTTCTCGGATCCTCCTGGCTTCTTCCCTCCGATTTTCCTCTCCGTCACAAATTTGGGTCGTTCCGTCAATCCTTCCCGGGGTCTTTTGGCAATATTTTGAAGAATGGAATGTTGAAAAAAACAATCGAAGATTCACCTCCGCCTTATTTGTATCTTCATCTCTCTCATGATGCCGGCGACTATGATAAGCTCTTTTATTGCGACCGACAACAAAATCTTCTAAAGAAGGTCCCATGGTTGATTATGGAGACAAATAATTACCTGGTTCCGGGAATTTTTCTAGTTTCTTCTTTCAGAGAAGAGCTTAATAAACTCTTTCCGGTGAAGGACACTGTGTTTCACCATCTGGGACGGTACCTTTTCCACCCGACAAATGACGTTTGGGGGCTGATTTTGAGATCTTACAAGCCATATTTTTCTAGAGCAAACGAAATGGTCGGGATTCAAATCCGAATTTTTGGGTCAGAATCTGGGTCGATTAAGGACCAAATGAATCAACTTCTAGTTTGCACACAGAAGAAGAAATTACTACCTGAGCTCGAGCCATCATCACCAGTGAAGATGAACTCCACCTCTCAGAAGGTGAAAGTTGTGCTAGTGACGTCTCTAAGCGCTCAATACTCAGAAACCTTAAAGGAGATGTATTGGGATCATCCGACTGTCGACGGCGAGGTGGTGGCAGTGTACCAGCCGAGCCACGAGGGGATTCAAAGCTCCAACAGTAGGATGCACAACCGGAAGGCATTGGCGGAGATGTACCTTTTGAGCTTGAGCGACGTGTTGGTGACGAGCGATTGGTCGACATTTGGATATGTGGCACAGGGGCTGGCCGGAGTGAAGCCATGGATGCTTTACAAGCCGGAGGATAAGGTGTTTTGGGCGTTACAACAATGGCTAAAGTACAGAACGAGGAACGAGACGACTAACGACTGGCCATGCCGGCAGGCGGTGTCCATGGAGCCATGCCTCCACGTGCCGCCGGTGTGCGATTGCGATGAGATGAAAAGAAGGGATGCAGGGAATGTTTTGCCGTATGTGATTCATTGTGAAGACGCAAGTTGGGGCCTTAAGTTAGGTTGA 1641 47.04 MELAKTTTMKTKTKKLVLLIAVSVMVVVISQQFWMPSFDLNHLWRTVSYHGFTNNYPRNNDKFIDGLLPPGFDQKSCLSRYQLNLYKKPSPHYPSFPLLSKLRRYEALHSRCGPNSPSFRRALVGLTSPTNSTSSSEDDCKYLVILTRDGLGNRILALLSAFFYALIANRVILIDQANILDDLFCEPFLGSSWLLPSDFPLRHKFGSFRQSFPGSFGNILKNGMLKKTIEDSPPPYLYLHLSHDAGDYDKLFYCDRQQNLLKKVPWLIMETNNYLVPGIFLVSSFREELNKLFPVKDTVFHHLGRYLFHPTNDVWGLILRSYKPYFSRANEMVGIQIRIFGSESGSIKDQMNQLLVCTQKKKLLPELEPSSPVKMNSTSQKVKVVLVTSLSAQYSETLKEMYWDHPTVDGEVVAVYQPSHEGIQSSNSRMHNRKALAEMYLLSLSDVLVTSDWSTFGYVAQGLAGVKPWMLYKPEDKVFWALQQWLKYRTRNETTNDWPCRQAVSMEPCLHVPPVCDCDEMKRRDAGNVLPYVIHCEDASWGLKLG 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25511120 25514523 - CaPI482276_07g011020.1 Cam07g1102 131395

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1102 546 Gene3D - 319 480 - -
Cam07g1102 546 Pfam Xyloglucan fucosyltransferase 52 518 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cam07g1102 546 PANTHER FUCOSYLTRANSFERASE 2-RELATED 12 545 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
Cam07g1102 546 Gene3D - 138 186 - -
Cam07g1102 546 FunFam Galactoside 2-alpha-L-fucosyltransferase 138 189 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1102 K13681 - - csv:101222105 942.569
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1243 Cam-Chr4:26432944 Cam07g1102 Cam-Chr7:25511120 2.60E-142 dispersed
Cam07g1102 Cam-Chr7:25511120 Cam05g2605 Cam-Chr5:33662613 1.00E-156 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam05g2605 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.1 5.4e-158 554.7
Cam04g1243 . 94 564 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 8.4e-151 530.8
Cam05g2605 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.2e-166 581.3
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 5.6e-160 561.2
Cam05g2605 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.4 1.6e-137 486.5
Cam04g1243 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 7.0e-133 471.1
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 2.7e-183 638.6
Cam08g1317 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 3.9e-169 591.3
Cam05g2605 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.0e-127 452.6
Cam05g2605 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 7.5e-182 634.0
Cam04g1243 . 98 565 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.2e-169 592.0
Cam05g2605 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 1.6e-200 696.0
Cam04g1243 . 40 562 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 2.3e-188 655.6
Cam07g1102 . 52 545 Xyloglucan Fucosyltransferase1 AT2G03220 52.2 1.8e-151 533.1
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.2e-154 543.5
Cam04g1243 . 76 565 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 7.3e-144 507.7
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 3.5e-149 525.4
Cam04g1243 . 87 565 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 4.7e-138 488.4
Cam05g2605 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.9 1.5e-152 536.6
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 4.9e-143 505.0
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 5.7e-186 647.5
Cam05g2605 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.0e-127 452.6
Cam05g2605 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 7.5e-182 634.0
Cam04g1243 . 98 565 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.2e-169 592.0
Cam05g2605 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 64.0 1.6e-200 696.0
Cam04g1243 . 40 562 Xyloglucan Fucosyltransferase1 AT2G03220 61.4 2.3e-188 655.6
Cam07g1102 . 52 545 Xyloglucan Fucosyltransferase1 AT2G03220 52.2 1.8e-151 533.1
Cam05g2605 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.7 7.5e-182 634.0
Cam04g1243 . 98 565 Xyloglucan Fucosyltransferase1 AT2G03210 60.4 3.2e-169 592.0
Cam05g2605 . 58 539 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.0e-127 452.6
Cam05g2605 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.9 1.5e-152 536.6
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT2G15390 52.7 4.9e-143 505.0
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 3.5e-149 525.4
Cam04g1243 . 87 565 Xyloglucan Fucosyltransferase1 AT2G15370 50.1 4.7e-138 488.4
Cam05g2605 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 57.1 5.4e-158 554.7
Cam04g1243 . 94 564 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 8.4e-151 530.8
Cam05g2605 . 80 566 Xyloglucan Fucosyltransferase1 AT1G14100 58.7 5.2e-166 581.3
Cam04g1243 . 96 564 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 5.6e-160 561.2
Cam05g2605 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.4 1.6e-137 486.5
Cam04g1243 . 87 566 Xyloglucan Fucosyltransferase1 AT1G14110 51.2 7.0e-133 471.1
Cam05g2605 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.7 1.2e-154 543.5
Cam04g1243 . 76 565 Xyloglucan Fucosyltransferase1 AT2G15350 50.3 7.3e-144 507.7
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT3G19280 64.3 1.7e-190 662.5
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT3G19280 63.1 5.7e-186 647.5
Cam02g0631 . 1 505 Xyloglucan Fucosyltransferase1 AT1G49710 65.0 2.5e-192 668.7
Cam05g1171 . 1 514 Xyloglucan Fucosyltransferase1 AT1G49710 61.9 2.7e-183 638.6
Cam08g1317 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 3.9e-169 591.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007613 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 2 1 1 0 36