Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1127 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTCGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATATCAAGCATGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACGACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAATTCAAGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAATCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGAAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGATTTCTGCAGTCCAAAAGTCTGTCTAACTAATGGCGTCACTACATTCACAAACTGCCTCCACCATTTATCCGATGAAAAGTTCGCAGAAGAGTTACAAATCCAGGAAGCAATCGCTTCCTCCTTATCATCCACTTCTCCTTCTAAAGGCCTTCGCGCAATCTGTATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAGTCTGTTCCCATACCTTCTGCACTGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGCCGATGATGGATGAGGGGGATGAGGAGGCGGTGGAGTGTCCGAGTTGTTGGAGAATGTTCTGCGCTCAGTGTAAAGTGGGATGGCATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGTGATGAGGATGAAACTGGCGGATAAAAAGCAAATGGAAGAGATGCCCTAA 2733 44.64 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGSNYGLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGIQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDFCSPKVCLTNGVTTFTNCLHHLSDEKFAEELQIQEAIASSLSSTSPSKGLRAICMDAKSASEMFTNRVCSHTFCTDCISRHIAAKLEETMPMMDEGDEEAVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25758804 25766027 - CaPI482276_07g011270.1 Cam07g1127 131420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1127 910 Gene3D - 590 707 IPR036431 GO:0003677(InterPro)
Cam07g1127 910 SMART ARID_2 594 697 - -
Cam07g1127 910 ProSitePatterns Zinc finger RING-type signature. 821 830 IPR017907 -
Cam07g1127 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 804 860 IPR013083 -
Cam07g1127 910 ProSiteProfiles Zinc finger RING-type profile. 805 858 IPR001841 -
Cam07g1127 910 SUPERFAMILY RING/U-box 805 862 - -
Cam07g1127 910 MobiDBLite consensus disorder prediction 454 475 - -
Cam07g1127 910 CDD ARID 599 697 - -
Cam07g1127 910 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Cam07g1127 910 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 763 IPR042293 -
Cam07g1127 910 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677(InterPro)
Cam07g1127 910 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1127 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1127 Cam-Chr7:25758804 Cam08g0052 Cam-Chr8:1097736 5.40E-17 dispersed
Cam07g1127 Cam-Chr7:25758804 Cam09g0131 Cam-Chr9:2129107 2.60E-293 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam06g0806 . 64 415 ARID Transcription Factor Family AT1G04880 58.2 1.4e-106 383.6
Cam10g0009 . 289 559 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cam05g1700 . 16 309 ARID Transcription Factor Family AT1G76110 67.8 5.3e-111 397.9
Cam10g0009 . 268 589 ARID Transcription Factor Family AT1G76510 60.2 1.7e-109 393.3
Cam07g1127 . 1 762 ARID Transcription Factor Family AT3G43240 59.3 8.9e-260 893.3
Cam09g0131 . 92 853 ARID Transcription Factor Family AT3G43240 58.0 4.1e-257 884.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52302 PF01388 ARID 9.00E-14 CL0123 Cam TR