Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1127 ATGCTTCATTCCGTAGTAGCTGCTAGACAAACTTGTAGCCTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGAAGTTGATGAGGATAAGTTGAGATATCCATTTCCGGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTTTGGCAAATCCGAGCAAGGATGAATTTAGTAGAATTGTGGAATCATGTCTACCGAGCTTCGTCTACTTGCAAGGGGAACAACTCGGAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGGACTATTCAATACTGCACTACCAACCATTGTGTATTTAGAAATTCCTAATGGAGGCAGAATAGCGGAGGCTCTTCATTCTAAGGGAATTCCTTATCTCATATATTGGAACAGCACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTTTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACGTGCTGCTTTTAGGCTTTATTGTATGGGGAGCAATTATGGTCTGCCTGGGATTGCTGATGACAGTATTATGAGTGATCTAGAGCCACAGCTTGTTGGGGAACCCCTAAAGATTAACGTAGAACCCCCCCAGGTAGATGCAGGTGAAGGTGAAGATGAAGATGGTTCTTTAGAAACCCTCCCAGCCATAAGTATTCATGACAATAATGTGACCGTGAGATTTCTTATCTGTGGAGTGCCTTGCACACCGGATGCCTGCTTATTGAGATCATTGGAGGATGGCCTTAATGCGCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTCAGTGCTCCTCCACCACCTCTTCAAGCAGGATCCTTTTCTCGTGGAGTTGTGACAATGCGGTGTGATATGGTGACTTGTAGTTCAGCCCACATCTCAATATTGGTGTCTGGTAGCGCTCATACTTGTTTTGATGATCAGCTCTTGGAGAAACATATCAAGCATGAGATTATAGAAAATAACCAGTTAGTTCATGCCATGCACGACTGTGAGGGCAACAAACCTCACATGCACGAGCCTCGAAAATCTGCTTCAGTTGCCTGTGGGGCAACAGTATTTGAGGTTTCTATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTTGCACCTGATATGTCATATCGGAGTTTAGTTGCACTCGGTATTGGGGGAATTCAAGGTTTACCTGTTGCTTCTTTTGAGAAAGAAGATGCCGAGCGATTGCTCTTCTTTTGTTCAGGGGATGAGAATGATAAACATTCAGAGCAGTTGCTTGTAAGTGTATTACCCAGCTGGTTTAAGCCACCTACTCCTAGTAGAAAGAGAGTAGAACCAAGCCAAGGAATAAGAAGCACTCTTTCACATGACAGTCCTGCATATGCAAACATCCCTTCCATTAGAAGAGTAGGTAGAGAGGAGCCTGCACCAATGAATGGGTTCAAGGCACCCATACTCCCAACGAGGAAAAGATTAAAAGTAGCCTCCATGAGGCCTGTTCCACGTATGAATAGGAATAAAATGATGCCTTTCTCTGGATTGACTGAAGTAGATGGGAATAACGGAGGCCTATCCAAGGGTAGTTTACCCGTTGTTACCCCGTCAAAGCATGTAACTGTAGGATCAACTTCTGCAACACACAGAAAATCTTTTTCAAGCTCATCTCAATCTAAGCAGATTATTTCCTTGAACCCACTGCCTCTAAAGAAGCATGGTTGTGGAAGAAACCCAATTCATGATTGCTCAGAGGAAGAGTTCTTGAAAGATGTTATGGAGTTTTTACTGCTTAGAGGACATTCACGACTTATTCCTCAAGGTGGACTTGAGGAGTTTCCAGATGCCATACTCAACGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACCCGAGGAGGCTTTCATGTCGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAAAGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCACGATGATGTAGATGGAGAATGCTGTCTTTTGTGCCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATTTGTGGTGAATGGGCCCATTTCGGGTGCGATCGAAGGCAGGGTCTAGGAGCATTTAAGGATTATGCCAAAACAGATGGGCTAGATTTCTGCAGTCCAAAAGTCTGTCTAACTAATGGCGTCACTACATTCACAAACTGCCTCCACCATTTATCCGATGAAAAGTTCGCAGAAGAGTTACAAATCCAGGAAGCAATCGCTTCCTCCTTATCATCCACTTCTCCTTCTAAAGGCCTTCGCGCAATCTGTATGGATGCGAAATCCGCCTCCGAAATGTTCACAAACAGAGTCTGTTCCCATACCTTCTGCACTGATTGCATCTCAAGGCACATCGCCGCAAAGCTTGAGGAGACAATGCCGATGATGGATGAGGGGGATGAGGAGGCGGTGGAGTGTCCGAGTTGTTGGAGAATGTTCTGCGCTCAGTGTAAAGTGGGATGGCATGGGGAAATGGAATGCGGAGAATTTGAGAAACTGCGGAAGGAGGCAGGAGGAAGTGTAGACAGAGACGACGTGATGAGGATGAAACTGGCGGATAAAAAGCAAATGGAAGAGATGCCCTAA 2733 44.64 MLHSVVAARQTCSLLAVTCGSVPKVKCEEEVDEDKLRYPFPELVSSGRLEVRVLANPSKDEFSRIVESCLPSFVYLQGEQLGNDEIGSLVWNGVDLSLEDLCGLFNTALPTIVYLEIPNGGRIAEALHSKGIPYLIYWNSTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLARAAFRLYCMGSNYGLPGIADDSIMSDLEPQLVGEPLKINVEPPQVDAGEGEDEDGSLETLPAISIHDNNVTVRFLICGVPCTPDACLLRSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISILVSGSAHTCFDDQLLEKHIKHEIIENNQLVHAMHDCEGNKPHMHEPRKSASVACGATVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGIQGLPVASFEKEDAERLLFFCSGDENDKHSEQLLVSVLPSWFKPPTPSRKRVEPSQGIRSTLSHDSPAYANIPSIRRVGREEPAPMNGFKAPILPTRKRLKVASMRPVPRMNRNKMMPFSGLTEVDGNNGGLSKGSLPVVTPSKHVTVGSTSATHRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIHDCSEEEFLKDVMEFLLLRGHSRLIPQGGLEEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLDFCSPKVCLTNGVTTFTNCLHHLSDEKFAEELQIQEAIASSLSSTSPSKGLRAICMDAKSASEMFTNRVCSHTFCTDCISRHIAAKLEETMPMMDEGDEEAVECPSCWRMFCAQCKVGWHGEMECGEFEKLRKEAGGSVDRDDVMRMKLADKKQMEEMP 910
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25758804 25766027 - CaPI482276_07g011270.1 Cam07g1127 131420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1127 910 Gene3D - 590 707 IPR036431 GO:0003677(InterPro)
Cam07g1127 910 SMART ARID_2 594 697 - -
Cam07g1127 910 ProSitePatterns Zinc finger RING-type signature. 821 830 IPR017907 -
Cam07g1127 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 804 860 IPR013083 -
Cam07g1127 910 ProSiteProfiles Zinc finger RING-type profile. 805 858 IPR001841 -
Cam07g1127 910 SUPERFAMILY RING/U-box 805 862 - -
Cam07g1127 910 MobiDBLite consensus disorder prediction 454 475 - -
Cam07g1127 910 CDD ARID 599 697 - -
Cam07g1127 910 Pfam ARID/BRIGHT DNA binding domain 600 697 IPR001606 GO:0003677(InterPro)
Cam07g1127 910 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 7 763 IPR042293 -
Cam07g1127 910 SUPERFAMILY ARID-like 597 712 IPR036431 GO:0003677(InterPro)
Cam07g1127 910 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1127 Cam-Chr7:25758804 Cam08g0052 Cam-Chr8:1097736 5.40E-17 dispersed
Cam07g1127 Cam-Chr7:25758804 Cam09g0131 Cam-Chr9:2129107 2.60E-293 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52302 PF01388 ARID 9.00E-14 CL0123 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1127 - - - 0.0