Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1140 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGGTCAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTCTCGGCTCTAAATGCCATGTATAATAGTTTAAACTCGCCTCCAATTCTAACACAATGGAGTTCAAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCGTTACTTGCTTAAGCTCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGATCACTGGGATACCAGCTCTCAAGTTTGACATCTCTAAGTAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTCGCTTATTTCCTTGAACATGAGCCACAACCAGCTTCAGAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGTCCATGTTGGATGTCTCTTTCAATTTTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTCTGAACACAATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGGTGGGTTCCTGAAAGATTGAAGAACATTAATATTCAGGAGGGTGGCAATTCTTGGAGTTTTGGGCTTGCACCCCCACCTCCACCTGGGACACCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAATTACAGCCCACTGAGTAGTGCTGGTGGTGGTGGCGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAGTACTAGCATATCTCCTTGTAAAGAGAAGACCCAAGAGGTCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTAGCATATCTCCTGCTTCAAATGAAGTGCAAGATACATTGGCAGAGATGAAACTTGTTCATACTTCATCCTCATTTGATGCAAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTCGACGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTCCTCCGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACAGGTAGTTTCAGTGTAGAAAACCTTCTCGGTGAGGGATCACTTGGTCGTGTTTATCGGGCTCAGTTCAACGATGGGAAGGTTCTTGCCGTGAAGAAAATAGATTCAGCTGCCTTCCCTAAAGAATTGTTGGAATATTTCACGGAGATAGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCGGAGCATGGCCTGCATTTGCTACTATATGAGTTCCATAAGAATGGCTCACTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATTGCTTTGGGGACGGCCCGTGCTTTGGAGTACCTACATGAAGTTTGTGCCCCGTCTGTTGTTCACAGAAATATTAAGTCATCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGCCTGGCTAGTTTTATAACCAATCTAGATCAGGTATTAGATCAGCAGCCAGGATCTGGGTACAGTGCTCCTGAGGTTACAATGTCTGGCCAATATACATTAAAAAGCGACGTATATAGCTTTGGAGTAGTGATGTTGGAACTTCTAAGCGGACGCAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACACCTCAGCTCCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGCCTCTACCCAGTCAAGTCTCTTTCAAGATTCGCAGACGTTGTAGCTCTCTGTGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCAGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGGTCATCTTTTAGAACTGATGATCCGGGTGAACCTGATGGCGCAATCAATGAAAACTGA 2193 43.78 MVKKWSWGEPLLLVSICILGWRVSFINGATDPGDVSALNAMYNSLNSPPILTQWSSSGGDPCGQIWKGVTCLSSRVTEISLSGLGLSGSLGYQLSSLTSLSNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSSLISLNMSHNQLQNQVNDMFWKLSSLSMLDVSFNFLSGALPQSFSNLTSLNTMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNNYSPLSSAGGGGGSNRSGISGGAIAGILISVLVVGAVLAYLLVKRRPKRSSTDIEKQKHGNLPSISPASNEVQDTLAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTPPISVKSYSIADLQMATGSFSVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPKELLEYFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLYEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSSNILLDAEMNPHLSDCGLASFITNLDQVLDQQPGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPGEPDGAINEN 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25833262 25839883 - CaPI482276_07g011400.1 Cam07g1140 131433

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1140 730 Gene3D Phosphorylase Kinase; domain 1 382 498 - -
Cam07g1140 730 PANTHER LEUCINE RICH REPEAT KINASE 2 296 695 IPR051420 -
Cam07g1140 730 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cam07g1140 730 SUPERFAMILY L domain-like 30 236 - -
Cam07g1140 730 SUPERFAMILY Protein kinase-like (PK-like) 401 693 IPR011009 -
Cam07g1140 730 MobiDBLite consensus disorder prediction 365 390 - -
Cam07g1140 730 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
Cam07g1140 730 Pfam Leucine rich repeat 121 178 IPR001611 GO:0005515(InterPro)
Cam07g1140 730 Gene3D Transferase(Phosphotransferase) domain 1 500 715 - -
Cam07g1140 730 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam07g1140 730 Gene3D Ribonuclease Inhibitor 31 251 IPR032675 -
Cam07g1140 730 MobiDBLite consensus disorder prediction 321 341 - -
Cam07g1140 730 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam07g1140 730 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
Cam07g1140 730 CDD STKc_IRAK 427 696 - -
Cam07g1140 730 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 385 498 - -
Cam07g1140 730 SMART LRR_typ_2 143 166 IPR003591 -
Cam07g1140 730 SMART LRR_typ_2 97 121 IPR003591 -
Cam07g1140 730 SMART LRR_typ_2 167 190 IPR003591 -
Cam07g1140 730 MobiDBLite consensus disorder prediction 245 270 - -
Cam07g1140 730 MobiDBLite consensus disorder prediction 704 730 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1140 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2335 Cam-Chr1:35453964 Cam07g1140 Cam-Chr7:25833262 1.00E-96 dispersed
Cam02g0136 Cam-Chr2:2464377 Cam07g1140 Cam-Chr7:25833262 1.90E-106 dispersed
Cam07g1140 Cam-Chr7:25833262 Cam10g1702 Cam-Chr10:31046819 3.20E-84 dispersed
Cam01g0991 Cam-Chr1:13669430 Cam07g1140 Cam-Chr7:25833262 1.70E-151 transposed
Cam08g0918 Cam-Chr8:14075535 Cam07g1140 Cam-Chr7:25833262 7.80E-165 transposed
Cam03g1526 Cam-Chr3:30206806 Cam07g1140 Cam-Chr7:25833262 3.30E-49 wgd
Cam07g1140 Cam-Chr7:25833262 Cam09g0143 Cam-Chr9:2246534 1.80E-212 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam01g0991 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam07g1140 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.1 1.0e-204 710.3
Cam09g0143 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 1.3e-186 650.2
Cam08g0918 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.1 4.9e-154 542.0
Cam01g0991 . 17 689 Strubbelig Receptor Gene Family AT1G53730 50.9 3.4e-147 519.2
Cam07g1140 . 11 714 Strubbelig Receptor Gene Family AT3G14350 56.7 4.8e-183 638.3
Cam09g0143 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.6e-167 586.6
Cam01g0991 . 138 711 Strubbelig Receptor Gene Family AT4G22130 63.0 1.3e-178 623.2
Cam07g1140 . 398 724 Strubbelig Receptor Gene Family AT4G22130 64.1 2.7e-120 429.5
Cam09g0143 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 6.3e-117 418.3
Cam02g0136 . 484 789 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cam08g0918 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cam01g2335 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85318 PF07714 PK_Tyr_Ser-Thr 7.10E-41 CL0016 Cam PK