Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1158 ATGAGTAATTGGTTGGGTTTTTCTCTTACTCCCCATCTCAGAATCCATGATGCTGCTGCCGCCGCCGATGAACAACCCGACCACGCCGCCTTCCCGCATCTCATGCCGCTCCGCTCCGATGGATCTCTTTGTATCGCCGCCGCCCACGATTGGAGATCGTATGAGAATGAAATGGGTGCAACGAATGAAGAGGAAAGTCCAAAGCTTGAGGACTTTCTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCATAGTAGCAACGCCGCCGCCTTTATTCAGCCGAATAATAATAATAATAGTAGTAGTAGTAATAATAATAATAATAATAATGATGATAAATACCATTACCAAGCGGATCATCAAACCCATCAATCTCTAATTCCCAACAATACTAATGGAATTTATAAGTCCTGGTTGGGACCCACTCCGCAAAATGAGTGTCGGTTTCAATCTCTTTCTCTCGGTATGAGCCCCAACTCCCAAAACGACGTCGCTTCATTGCCTTCACCGCCCTCGCCGCCGCCGCATATGGCTGGTGATTCCCGGAAACGCCCCATGCCGGTAGCCAAGCCTCTGATTAAAGAACCTGTACCTAGAAAATCCCTCGATACTTTTGGACAAAGAACCTCCCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACACTTATGGGATAACAGCTGTAGAAAAGAGGGACAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAGGAAGAGAAAGCGGCACGAGCGTATGATTTAGCTGCTTTAAAATATTGGGGACCAACTACGCATATAAATTTTCCGCTGAGCACTTATGAAAACGAGCTGGAAGAGATGAAGAACATGACCAGACAAGAGTTTGTAGCCAATTTGAGAAGGAAAAGCAGTGGATTCTCAAGAGGAGCTTCAATGTACAGAGGAGTTACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATAGGAAGGGTTGCAGGAAATAAAGATTTGTACCTTGGCACATTTAGCACACAAGAGGAGGCAGCGGAGGCGTATGACATAGCGGCAATCAAGTTTAGGGGGACAAGTGCAGTAACAAATTTCGACATTAGTAGGTATGACGTAAAGAGGATTTGCTCTAGCTCGACTCTGATTGCTAGTGACCTTGCGAAACGTTCACCATTAAAGGACGGTACTCCCTCAACTAATGAAGACTATTCTGCCTGTGCTTCTCCATCATCGTCCTCACAACCTCTCTTGGCCATTACTGGCGATGGTGGTGCTGAGAGCCACCACGAGTTGGCTGACGTGGTTTGGTGTGACAATACTGCTACAGACGATAGTAATCAGCACCACGAGAATGTAGCGAAGATGAACAACGACTTGAGTTTGATGGGTTCGAGCAATAGAACGATGGATCCATCGTCGAAGTGCTCTCCGGTGCAAAACAATGAAGAGTTCGGGATTGGGGTAGGGGGTGGAGGGGAGTACTCACAAGGCTATTTCTCAATGCAAGAAGAAAAATATGAAGATGGGAATGAGGAGGAGGGTGATCAAAATAGTAGGCAGGTGAGTGTAACATTGGCTCATCATCATGTTCCAATGTTTGCACTATGGAACCAATGA 1641 46.19 MSNWLGFSLTPHLRIHDAAAAADEQPDHAAFPHLMPLRSDGSLCIAAAHDWRSYENEMGATNEEESPKLEDFLGNCYSNSPPNDQTHSSNAAAFIQPNNNNNSSSSNNNNNNNDDKYHYQADHQTHQSLIPNNTNGIYKSWLGPTPQNECRFQSLSLGMSPNSQNDVASLPSPPSPPPHMAGDSRKRPMPVAKPLIKEPVPRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIASDLAKRSPLKDGTPSTNEDYSACASPSSSSQPLLAITGDGGAESHHELADVVWCDNTATDDSNQHHENVAKMNNDLSLMGSSNRTMDPSSKCSPVQNNEEFGIGVGGGGEYSQGYFSMQEEKYEDGNEEEGDQNSRQVSVTLAHHHVPMFALWNQ 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 25946112 25949866 - CaPI482276_07g011580.1 Cam07g1158 131451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1158 546 MobiDBLite consensus disorder prediction 76 115 - -
Cam07g1158 546 MobiDBLite consensus disorder prediction 401 422 - -
Cam07g1158 546 FunFam AP2-like ethylene-responsive transcription factor 315 376 - -
Cam07g1158 546 CDD AP2 315 376 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 ProSiteProfiles AP2/ERF domain profile. 214 280 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 102 447 - -
Cam07g1158 546 SUPERFAMILY DNA-binding domain 213 282 IPR016177 GO:0003677(InterPro)
Cam07g1158 546 Gene3D AP2/ERF domain 316 376 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 Gene3D AP2/ERF domain 213 282 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 SUPERFAMILY DNA-binding domain 315 376 IPR016177 GO:0003677(InterPro)
Cam07g1158 546 PRINTS Ethylene responsive element binding protein signature 356 376 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 MobiDBLite consensus disorder prediction 71 118 - -
Cam07g1158 546 Pfam AP2 domain 214 272 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 Pfam AP2 domain 317 366 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 MobiDBLite consensus disorder prediction 397 422 - -
Cam07g1158 546 MobiDBLite consensus disorder prediction 155 189 - -
Cam07g1158 546 CDD AP2 213 282 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 ProSiteProfiles AP2/ERF domain profile. 316 374 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 MobiDBLite consensus disorder prediction 155 169 - -
Cam07g1158 546 SMART rav1_2 316 380 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 SMART rav1_2 214 286 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1158 546 FunFam AP2-like ethylene-responsive transcription factor ANT 213 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1825 Cam-Chr1:31775597 Cam07g1158 Cam-Chr7:25946112 2.70E-102 dispersed
Cam02g2147 Cam-Chr2:34252111 Cam07g1158 Cam-Chr7:25946112 3.50E-47 dispersed
Cam04g0845 Cam-Chr4:22670180 Cam07g1158 Cam-Chr7:25946112 2.20E-45 dispersed
Cam07g1158 Cam-Chr7:25946112 Cam11g0921 Cam-Chr11:13512729 1.20E-93 dispersed
Cam07g1158 Cam-Chr7:25946112 Cam08g2145 Cam-Chr8:26838530 3.00E-111 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52304 PF00847 AP2 4.20E-13 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1158 K09285 - csv:101205762 867.455