Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1175 ATGGGAAACCAGAAGCAAAAGTGGACGTCAGAGGAGGAAGACGCACTTTTGGCGGGCGTCAATAAGCACGGTCCTGGAAAGTGGAAGAACATTCTCAAAGATCCTGATTTCGCTCCGTCTCTCACTCATCGCTCTAACATTGACCTCAAGGACAAATGGCGTAATTTGAGTGTCAGTACTGCTTCACAAGGCTCAAAAGAGAAGTCTAGGATTCCTAAAGCAAAAGCTATCGTTGCTGCTATTTCTAACAACCAAAGCTCTGCTCCTGCTAAGCTTATTGCAGCTGCTGATACTGCAGGGGATGATACACCAAACAACAGCACACAAGATGGGAAAAATGTCCCAAGGTATTATTCAATGATTTTTGAAGCCCTTTCAACTATAAAAGATTCTAATGGATGTGACATAGGTACAATTGTTAACTTTATTGAGCAAAGGCATGAGGTGCCACAAAACTTTAGAAGGCAATTGAGCTCAAAGTTGAGAAGGCTTGTTTCACAAGGGAAGCTTGAAAAGGTTCAGAATTGCTACAAGGTGAAGAAAGACAATTCGTTGGCAGTTAAAACTCCTACTCCCAAACAAAAAGATGTCAGGCAACGGATATCGCAACAGACTATGGGAGCGGTGATGCCATCAGGGGAGACGGTGGAAGATGCAGCGAAAGCGGCTGCCTACAAAGTTGCTGATGCAGAGAACAAATCCTTCTTAGCTGCTGAAGCTGTGAAGGAGGCAGAGAGAATTGCAAAGATGGCCGAAGATACAGATTCAATGCTACAGATTATAAAAGAGATGTATGAAAAATATTTGGAGCAGAGGCCGAAAGGCCAGAGGGCCGCCTTAGAAAACCTAACGCCCTCGCATTATAACTTCAATATGGCTGGTTTGGCTCCAGAAGGTTCTCAATTTGATGCACGTCAGTATGACACAAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATACGATGAAGTTTACGATAGTTTTGATTCTATGGGCCTGCAAGAAAATCTTCTCAGAGGCATCTATGCCTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTTTGCAAAGGGCTTGATGTGATCCAACAAGCCCAGTCTGGAACAGGGAAGACTGCAACCTTTTGCTCTGGCATTTTGCAGCAACTTGATTATGGTCTCGTGCAATGCCAGGCTTTGGTCCTGGCACCCACTAGGGAACTTGCCCAACAGATTGAGAAGGTTATGCGGGCCCTTGGTGATTATCTTGGTGTGAAAGTTCATGCTTGTGTTGGTGGGACAAGTGTACGGGAAGACCAGCGCATTCTTCAAGCTGGTGTTCATGTAGTTGTTGGTACGCCTGGTCGTGTGTTTGATATGTTACGTAGACAGTCACTTCGTCCTGACTACATTCGGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTTAAGGATCAGATATATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTTGGGGTCTTCTCTGCTACAATGCCGCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTTAGAATTCTTGTAAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTGAATGTTGACAAGGAAGACTGGAAGCTCGAGACCCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTTATCTTTGTCAATACTCGACGTAAAGTTGATTGGCTCACTGATAAGATGCGAAGCCGTGACCACACTGTATCTGCTACCCATGGTGACATGGACCAGAACACCCGAGACATTATTATGCGTGAGTTCCGTTCAGGTTCTTCTAGGGTTCTGATTACCACTGATCTATTGGCCCGTGGTATTGATGTCCAGCAGGTTTCCCTCGTTATTAACTATGATCTGCCGACACAACCGGAGAATTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCAATCAACTTTGTAACGACGGAGGACGAAAGAATGCTATTCGACATCCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCCAATGTTGCTGATCTCCTGTGA 2115 44.73 MGNQKQKWTSEEEDALLAGVNKHGPGKWKNILKDPDFAPSLTHRSNIDLKDKWRNLSVSTASQGSKEKSRIPKAKAIVAAISNNQSSAPAKLIAAADTAGDDTPNNSTQDGKNVPRYYSMIFEALSTIKDSNGCDIGTIVNFIEQRHEVPQNFRRQLSSKLRRLVSQGKLEKVQNCYKVKKDNSLAVKTPTPKQKDVRQRISQQTMGAVMPSGETVEDAAKAAAYKVADAENKSFLAAEAVKEAERIAKMAEDTDSMLQIIKEMYEKYLEQRPKGQRAALENLTPSHYNFNMAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26127321 26136687 - CaPI482276_07g011750.1 Cam07g1175 131468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1175 704 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Cam07g1175 704 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 328 690 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Cam07g1175 704 Gene3D - 540 704 IPR027417 -
Cam07g1175 704 SUPERFAMILY Winged helix DNA-binding domain 110 192 IPR036390 -
Cam07g1175 704 SMART h15plus2 111 176 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cam07g1175 704 FunFam Eukaryotic initiation factor 4A-III 539 704 - -
Cam07g1175 704 SMART ultradead3 350 547 IPR014001 -
Cam07g1175 704 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Cam07g1175 704 Gene3D - 321 539 IPR027417 -
Cam07g1175 704 Pfam DEAD/DEAH box helicase 356 518 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cam07g1175 704 Pfam Helicase conserved C-terminal domain 557 665 IPR001650 -
Cam07g1175 704 FunFam Telomere repeat-binding factor 1 2 58 - -
Cam07g1175 704 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cam07g1175 704 CDD SF2_C_DEAD 544 674 - -
Cam07g1175 704 Gene3D - 8 86 - -
Cam07g1175 704 FunFam Eukaryotic initiation factor 4A-II 319 538 - -
Cam07g1175 704 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 362 532 IPR014001 -
Cam07g1175 704 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 113 181 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cam07g1175 704 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 478 486 IPR000629 -
Cam07g1175 704 CDD SANT_TRF 6 56 - -
Cam07g1175 704 Pfam linker histone H1 and H5 family 115 174 IPR005818 GO:0000786(InterPro)|GO:0003677(InterPro)|GO:0006334(InterPro)
Cam07g1175 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 400 685 IPR027417 -
Cam07g1175 704 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 543 704 IPR001650 -
Cam07g1175 704 Gene3D - 110 197 IPR036388 -
Cam07g1175 704 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cam07g1175 704 FunFam Telomere repeat-binding factor 1 8 87 - -
Cam07g1175 704 CDD DEADc_EIF4A 336 533 - -
Cam07g1175 704 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 331 359 IPR014014 GO:0003724(InterPro)
Cam07g1175 704 SMART helicmild6 584 665 IPR001650 -
Cam07g1175 704 SMART sant 4 59 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1808 Cam-Chr1:31625375 Cam07g1175 Cam-Chr7:26127321 8.90E-15 dispersed
Cam06g1881 Cam-Chr6:29867140 Cam07g1175 Cam-Chr7:26127321 1.60E-44 dispersed
Cam07g1175 Cam-Chr7:26127321 Cam10g1488 Cam-Chr10:28597241 1.00E-140 dispersed
Cam01g2539 Cam-Chr1:36985620 Cam07g1175 Cam-Chr7:26127321 2.00E-24 transposed
Cam03g0293 Cam-Chr3:4118972 Cam07g1175 Cam-Chr7:26127321 2.50E-06 transposed
Cam05g0194 Cam-Chr5:2013381 Cam07g1175 Cam-Chr7:26127321 8.00E-73 transposed
Cam05g2696 Cam-Chr5:34366423 Cam07g1175 Cam-Chr7:26127321 1.50E-12 transposed
Cam08g1792 Cam-Chr8:24092942 Cam07g1175 Cam-Chr7:26127321 8.90E-63 transposed
Cam07g1175 Cam-Chr7:26127321 Cam09g0075 Cam-Chr9:1589265 6.70E-233 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52307 PF00270 DEAD 1.20E-39 CL0023 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1175 K03257 - csv:101223055 817.379