Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1232 ATGTTTTGGTCAATGAATCCTGTACGAATTCGCAGTTTGTTCTTCCTTCTATACTTCGCTGTTCTTCTTCAAGATCATTCCCTCTGTTCTTCTTATCCCACGCCCTTGAATTGTACGGACACAACCCGTTTATGTACCTCGTTTTTGGCCTTCAAGCCTCAGCCAAATCAGACACTTTCTGTGATCCAGAGCATGTTCGACGTATTGCCTGAAGATGTAACTGTGGAAGGCAATGGTCAGGACTATGTGTTCATCAGGAAGAACTGTTCCTGTGCCTCTGGGTTGAAGAAATACATAACCAACACCACTTTTACCATCAAATCCAATCACGGTCATGTATATGATATAGTCATGGAAGCGTATGATGGGCTTGCGCTGTTGCCCAACACAACCCGAATGGCGAGGAACGGCGCTGTTGTGTCTTTGAGATTGTTTTGTGCTTGTTCAAGCGGGTTGTGGAACTATTTGATGAGCTATGTGATGAGAGATGGTGACACCATAGAGTCTTTGGCTAGCCGATTTGGGGTTAGTATGGATAGCATTGAGTCGGTGAATGGAATTGAAAATCCCGGCAATGTCACTGTGGGTGCTTTGTATTATGTTCCCTTGAATTCGGTTCCTGGCGATCCTTATCCGTTGGAGACAGACATTTCTCCTGCTCCTACTCCAGCTCCTTCCTATACTCAGAACAATTTCTCAGATAATGCTCAGAACCCCAAGCGTCATCCTCCATATATATGGATTGTTGGAAGTTTGGGAATTATTCTTGTTCTGATTTTGGTAGGCATAGTAGGTTATGCTTGCTTCAGGTGGTTGAAGTGCTTTTCTAGATCAAGGAGTAGCCACTCCAAAGATCCCGGTGGCAAGGTTTCCCACAAGTTCCATATTCTTGGGAAGTCAAGTTTCTGCTGTGCTTCAGGAAGGTATATTTGCTGCAGTTCTGCTGATTGGAAGCAAGCCAATGGGGAATCTACCGACAACCAGAGTGCAATTCCAAAAGCTATCGAGAGTAATGTATTTGATGTAGACAAACCTGTGGTTTTTTCATGCGAAGAAATTTTTTCCTCAACTGATAGTTTCTCTGATTCAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCCTGCGTGACCAGGAAGTTGCTATAAAAAGAATGACTGCAACAAAAACTAAAGAGTTTATGGCAGAGATGAAAGTCCTCTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATTGGTTATGCAGCCAGTGAGGAGGAGCTTTTTCTTATTTATGAATATGCTCAAAAAGGTCCCCTCAAAAACCATTTGCATGATCCTCTGAACAAGGGTCATACACCGCTATCTTGGATTATGAGACTCCAAATTGCTTTGGACGCTGCGAGGGGTCTTGAATACATTCACGAGCATACTAAAACTCATTATGTTCATAGAGATATCAAGACAAGCAACATCTTACTTGATGGTTCTTTTAGGGCAAAGATTTCTGACTTTGGGTTGGCCAAACTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACGAAAGTTGTTGGCACATACGGCTATTTGGCTCCTGAATATTTGAGTAACGGTCTTGCGACAACCAAAAGTGATGTGTATGCTTATGGTGTCGTTCTTTTTGAGCTTATATCTGGAAAGGAGGCAATTATACGAACTGAGGGAACAACTATGAAAAATCCTGAAAGACGTTCACTGGCATCCATTATGTTAGCTGTTCTTCGGAATGCACCTGATCCTATGAATATGGCAAGTCTAAAAGATCAAGTTGATCCAAGTATGATGGATTTGTATCCTCATGACTGTCTATTTAAGGTGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATTCAATCTTACGACCCGACATGAAGCAAGTCGTAATATCCTTATCACAGATCCTACTCTCTTCGATTGAGTGGGAAGCGACTCTAGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 2013 42.52 MFWSMNPVRIRSLFFLLYFAVLLQDHSLCSSYPTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVLPEDVTVEGNGQDYVFIRKNCSCASGLKKYITNTTFTIKSNHGHVYDIVMEAYDGLALLPNTTRMARNGAVVSLRLFCACSSGLWNYLMSYVMRDGDTIESLASRFGVSMDSIESVNGIENPGNVTVGALYYVPLNSVPGDPYPLETDISPAPTPAPSYTQNNFSDNAQNPKRHPPYIWIVGSLGIILVLILVGIVGYACFRWLKCFSRSRSSHSKDPGGKVSHKFHILGKSSFCCASGRYICCSSADWKQANGESTDNQSAIPKAIESNVFDVDKPVVFSCEEIFSSTDSFSDSSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHANLVELIGYAASEEELFLIYEYAQKGPLKNHLHDPLNKGHTPLSWIMRLQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAYGVVLFELISGKEAIIRTEGTTMKNPERRSLASIMLAVLRNAPDPMNMASLKDQVDPSMMDLYPHDCLFKVAMLAKQCVDEDSILRPDMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26699487 26703959 + CaPI482276_07g012320.1 Cam07g1232 131525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1232 670 Gene3D LysM domain 156 202 IPR036779 -
Cam07g1232 670 FunFam Kinase family protein 335 431 - -
Cam07g1232 670 SUPERFAMILY Protein kinase-like (PK-like) 342 642 IPR011009 -
Cam07g1232 670 SMART serkin_6 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam07g1232 670 Gene3D Transferase(Phosphotransferase) domain 1 433 656 - -
Cam07g1232 670 SUPERFAMILY LysM domain 157 202 IPR036779 -
Cam07g1232 670 ProSiteProfiles LysM domain profile. 157 201 IPR018392 -
Cam07g1232 670 ProSitePatterns Protein kinases ATP-binding region signature. 366 387 IPR017441 GO:0005524(InterPro)
Cam07g1232 670 Gene3D Phosphorylase Kinase; domain 1 332 431 - -
Cam07g1232 670 Pfam Protein tyrosine and serine/threonine kinase 365 640 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam07g1232 670 FunFam PTI1-like tyrosine-protein kinase 3 432 656 - -
Cam07g1232 670 Pfam LysM domain 161 196 IPR018392 -
Cam07g1232 670 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 28 659 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Cam07g1232 670 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam07g1232 670 SMART LysM_2 158 202 IPR018392 -
Cam07g1232 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2308 Cam-Chr5:31193929 Cam07g1232 Cam-Chr7:26699487 8.40E-37 dispersed
Cam05g2759 Cam-Chr5:34820014 Cam07g1232 Cam-Chr7:26699487 6.60E-99 dispersed
Cam07g1232 Cam-Chr7:26699487 Cam07g0148 Cam-Chr7:2621570 2.80E-55 dispersed
Cam07g1232 Cam-Chr7:26699487 Cam05g2521 Cam-Chr5:33057827 9.70E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85328 PF07714 PK_Tyr_Ser-Thr 1.30E-48 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1232 - - - 0.0