Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1238 ATGGCGGAACCAAACAATTGGAATTCAGAATCTGAAAGTACAGAAATGAAAAGGGGAAAACAGACGGATCGAGAACAGAGAGATCAGAAACACCCAATTTACAGAGGCGTACGGAGAAGGAGTTGGGGTAAATGGGTGTCGGAGATCCGGCAGCCGAGGAAGAAGTCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCAGCGCGTGCACACGACGTGGCGGCGCTCAGCATCAAAGGTGATTCAGCAAAGGCCATTCTCAATTTCCCACAACTCGCTGGTTTGCTTCCACGGCCGGTGTCCTTAATGCCGAGGGATATTCAGGAGGCGGCTGCCAAGGCGGCGGCCATGGTCGATTTCGATTCCACTACGGCGTCGTTTTCGTCGTTTAATGATGAAGAAGGGTCAGAGGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAAGATATCAGAGCTGAGTCGTGGAACGAGTTCGAGTTCATTGACTCGGTTGATTGGTGGGGAAATCCGCCGTTTGCGGCCGGGGAATTGGATTTCTGTGCGGTGTTTTCAGATCAGAGTACTACTCCGGTTACCTTCGACGGCGGCGATTGGGAGTGA 612 52.12 MAEPNNWNSESESTEMKRGKQTDREQRDQKHPIYRGVRRRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQEAAAKAAAMVDFDSTTASFSSFNDEEGSEELGEIVELPNIEEDIRAESWNEFEFIDSVDWWGNPPFAAGELDFCAVFSDQSTTPVTFDGGDWE 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26776299 26776910 + CaPI482276_07g012380.1 Cam07g1238 131531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1238 203 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1238 203 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1238 203 MobiDBLite consensus disorder prediction 13 32 - -
Cam07g1238 203 MobiDBLite consensus disorder prediction 1 34 - -
Cam07g1238 203 Pfam AP2 domain 33 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1238 203 SUPERFAMILY DNA-binding domain 33 93 IPR016177 GO:0003677(InterPro)
Cam07g1238 203 SMART rav1_2 33 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1238 203 FunFam Ethylene-responsive transcription factor 2 32 93 - -
Cam07g1238 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 152 IPR051032 -
Cam07g1238 203 CDD AP2 32 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1238 203 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1238 203 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1238 Cam-Chr7:26776299 Cam09g0177 Cam-Chr9:2557370 2.30E-48 dispersed
Cam07g1238 Cam-Chr7:26776299 Cam08g1682 Cam-Chr8:23102991 3.30E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52313 PF00847 AP2 9.40E-14 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1238 K09286 - csv:101222354 363.229