Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1241 ATGGAAGTGCCCGAGTATCTTGTCGGTGGCTACTACGGCACCGGAGCCGGTCAATTTTCGCCGGAGAAGCAGAAATCCGCCGCCGAGCATTTCGCTGTCGATGAATATTTATTGGACTTCTCGAATGAAGATGTGGCAATGCATAGCGGTTTCTTCGATAACGTCGCCGGAAATTGCAGTGATTCGTCGACGGTTACTGCGATTGAGAGCTGCAATTCGTCTGTCTCCGGCGGAGATAACCAATTATTGGGAAAATTTGGGTCCGGAAGCTTCTGTGAAGCTCAATTCTCGAGCGAACTCTGCATTCCGTGCGACGATTTGGCGGAACTGGAATGGCTGTCGAATTTCGTTGAAGAATCATTTTCGACGGAGGAGATTGAGAAGGATTTTAAAGCTATTCCGTTCCTCCCCGGGGGGATCAGTACGGCGGCGACTCCAGAAACACCGTCGTCCTCAGGAGCAAATGCGTTTGGTTATGGAAGTGCAAAAACGACATCGTTTATTCACAGCGAAGCTCTCACGCTCCCCGGCAAAGCCCGAAGCAAACGTTCACGCGCTTCTCCTTGCGACTGGTCCACGCGGCTCCTCCAAGCGACGGCTCCGGAGAAAACGGAGGGGATGATGGCGAAGTCGGAAACGACATCGGGTCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGGCCGATGGGCCCAAAAACGCTTTGTAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGTCTTGTACCCGAATACCGACCCGCATCTAGCCCGACATTTGTATCAACGAAGCACTCGAATTCTCACCGGAAGGTGATGGAGCTTCGACGGCAGAAGGAGATGCAACACCAAGAGCAGTTTGTAAGTCAAAGTTCGATATTCAGCAGATCCAACGGCTGTAATGAGTACTTGATCCACCGTCACAACGGCGGTGATTTCAGTCACATGATGTAG 969 52.94 MEVPEYLVGGYYGTGAGQFSPEKQKSAAEHFAVDEYLLDFSNEDVAMHSGFFDNVAGNCSDSSTVTAIESCNSSVSGGDNQLLGKFGSGSFCEAQFSSELCIPCDDLAELEWLSNFVEESFSTEEIEKDFKAIPFLPGGISTAATPETPSSSGANAFGYGSAKTTSFIHSEALTLPGKARSKRSRASPCDWSTRLLQATAPEKTEGMMAKSETTSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVSTKHSNSHRKVMELRRQKEMQHQEQFVSQSSIFSRSNGCNEYLIHRHNGGDFSHMM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26807180 26808252 - CaPI482276_07g012410.1 Cam07g1241 131534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1241 322 PANTHER GATA TRANSCRIPTION FACTOR 30 285 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cam07g1241 322 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 Pfam GATA zinc finger 219 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 SMART GATA_3 213 263 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 PIRSF Txn_fac_GATA_plant 16 304 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cam07g1241 322 Gene3D - 214 294 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam07g1241 322 CDD ZnF_GATA 218 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 277 - -
Cam07g1241 322 FunFam GATA transcription factor 209 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1241 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0775 Cam-Chr6:10437028 Cam07g1241 Cam-Chr7:26807180 2.00E-34 dispersed
Cam07g1241 Cam-Chr7:26807180 Cam11g1533 Cam-Chr11:28166990 1.20E-67 dispersed
Cam07g1241 Cam-Chr7:26807180 Cam09g0008 Cam-Chr9:1040706 3.80E-106 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g303 Blo05g00081 Blo06g00706 . Bda10g00830 Bpe06g00746 Bpe10g00664 . . Cmo08g00689 Cmo17g00746 Cma01g00100 Cma14g01295 Car01g00085 Car14g01147 Sed06g2170 Cpe12g00660 Cpe17g00539 Bhi01g03395 Tan04g2676 Cmetu04g3117 Lac11g0763 Hepe02g1433 . . Cla07g01259 Cam07g1241 Cec07g1441 Cco07g1399 Clacu07g1325 Cmu07g1301 Cre07g1683 Cone20ag1264 Cone17ag0146 Cone16ag0712 Cone2ag0319 Lsi02g02999 Csa07g02450 Chy04g00936 Cme01g02907 . . . . . . . Bma15g00355 . Cmo01g00103 Cmo14g01329 Cma08g00726 Cma17g00778 Car08g00614 Car17g00719 Cpe02g01690 Cpe03g01098 Bhi09g00450 . . . . . . Cla09g00007 Cam09g0008 Cec09g0008 Cco09g0007 Clacu09g0009 . Cre09g0006 Lsi07g00519 . . Cme04g01124
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1671 . 89 355 C2C2-Gata Transcription Factor Family AT5G25830 55.7 8.4e-69 257.7
Cam11g1533 . 40 350 C2C2-Gata Transcription Factor Family AT5G25830 50.2 7.9e-67 251.1
Cam07g1241 . 96 287 C2C2-Gata Transcription Factor Family AT3G60530 50.5 6.2e-45 177.9
Cam01g2046 . 105 281 C2C2-Gata Transcription Factor Family AT4G36240 50.3 8.3e-42 167.5
Cam10g0224 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 54.1 3.2e-139 492.3
Cam09g1283 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 52.3 5.6e-136 481.5
Cam10g0224 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 51.0 6.1e-121 431.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013047 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52314 PF00320 GATA 1.90E-14 CL0167 Cam TF