Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1241 ATGGAAGTGCCCGAGTATCTTGTCGGTGGCTACTACGGCACCGGAGCCGGTCAATTTTCGCCGGAGAAGCAGAAATCCGCCGCCGAGCATTTCGCTGTCGATGAATATTTATTGGACTTCTCGAATGAAGATGTGGCAATGCATAGCGGTTTCTTCGATAACGTCGCCGGAAATTGCAGTGATTCGTCGACGGTTACTGCGATTGAGAGCTGCAATTCGTCTGTCTCCGGCGGAGATAACCAATTATTGGGAAAATTTGGGTCCGGAAGCTTCTGTGAAGCTCAATTCTCGAGCGAACTCTGCATTCCGTGCGACGATTTGGCGGAACTGGAATGGCTGTCGAATTTCGTTGAAGAATCATTTTCGACGGAGGAGATTGAGAAGGATTTTAAAGCTATTCCGTTCCTCCCCGGGGGGATCAGTACGGCGGCGACTCCAGAAACACCGTCGTCCTCAGGAGCAAATGCGTTTGGTTATGGAAGTGCAAAAACGACATCGTTTATTCACAGCGAAGCTCTCACGCTCCCCGGCAAAGCCCGAAGCAAACGTTCACGCGCTTCTCCTTGCGACTGGTCCACGCGGCTCCTCCAAGCGACGGCTCCGGAGAAAACGGAGGGGATGATGGCGAAGTCGGAAACGACATCGGGTCGGAAATGCCTGCATTGCGCGGCGGAGAAGACGCCGCAGTGGCGGACTGGGCCGATGGGCCCAAAAACGCTTTGTAACGCTTGTGGGGTCCGGTACAAGTCGGGTCGTCTTGTACCCGAATACCGACCCGCATCTAGCCCGACATTTGTATCAACGAAGCACTCGAATTCTCACCGGAAGGTGATGGAGCTTCGACGGCAGAAGGAGATGCAACACCAAGAGCAGTTTGTAAGTCAAAGTTCGATATTCAGCAGATCCAACGGCTGTAATGAGTACTTGATCCACCGTCACAACGGCGGTGATTTCAGTCACATGATGTAG 969 52.94 MEVPEYLVGGYYGTGAGQFSPEKQKSAAEHFAVDEYLLDFSNEDVAMHSGFFDNVAGNCSDSSTVTAIESCNSSVSGGDNQLLGKFGSGSFCEAQFSSELCIPCDDLAELEWLSNFVEESFSTEEIEKDFKAIPFLPGGISTAATPETPSSSGANAFGYGSAKTTSFIHSEALTLPGKARSKRSRASPCDWSTRLLQATAPEKTEGMMAKSETTSGRKCLHCAAEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPASSPTFVSTKHSNSHRKVMELRRQKEMQHQEQFVSQSSIFSRSNGCNEYLIHRHNGGDFSHMM 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26807180 26808252 - CaPI482276_07g012410.1 Cam07g1241 131534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1241 322 PANTHER GATA TRANSCRIPTION FACTOR 30 285 IPR051140 GO:0005634(PANTHER)|GO:0030154(PANTHER)
Cam07g1241 322 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 Pfam GATA zinc finger 219 253 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 SMART GATA_3 213 263 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 PIRSF Txn_fac_GATA_plant 16 304 IPR016679 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0045893(InterPro)
Cam07g1241 322 Gene3D - 214 294 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cam07g1241 322 CDD ZnF_GATA 218 265 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1241 322 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 277 - -
Cam07g1241 322 FunFam GATA transcription factor 209 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0775 Cam-Chr6:10437028 Cam07g1241 Cam-Chr7:26807180 2.00E-34 dispersed
Cam07g1241 Cam-Chr7:26807180 Cam11g1533 Cam-Chr11:28166990 1.20E-67 dispersed
Cam07g1241 Cam-Chr7:26807180 Cam09g0008 Cam-Chr9:1040706 3.80E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52314 PF00320 GATA 1.90E-14 CL0167 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1241 - - - 0.0