Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1252 ATGGGTGCCGACATGTCCAACAATAATAATACTAATCGCCTTGCTTTTACCAAAGACTTCTTCTCCTCTCCGGCTCTTTCTCTTACCCTTGCGGGGATTTTCCGTCGGGGTGAGGTGGCGGAGAAGGGAGATGTTGAGATGGAGGAGGTGGACGACGGTAGCGGTGGAGCGCGGAGAGATGATACGGCGGCGGAAGTTAGTAGCGAGAATTCGGGACCAGTGAGGTCGAGATCGGACGACGACGGTTTCGACGGCGGAGGAGCGCACGACGAGAATGAAGATGGGGTGGATCATGGGTGTCATGTAAAGAGAAGGAAGAAATATCATCGACATACAACCGAGCAGATCAGAGAAATGGAGGCGCTGTTTAAAGAGTCGCCACATCCAGATGAGAAGCAAAGGCAACAGCTTAGCAAGCGATTAGGACTTTCGCCAAGGCAGGTCAAGTTTTGGTTCCAAAATCGTCGAACTCAAATCAAAGCTATTCAAGAGCGGCATGAAAACACATTGTTAAAAGCTGAAATGGAGAAACTTCGAGAAGAAATTAAAGGAATGAGAGAAATTTGTAGGAAAAAAGTTGGTTGTCCAAACTGTGGGACGGCCGACGCCGGTGAAGACCACGTCGCTTTTACAACCACGGAGCAATTGCGTATTAAGAACGCCAAACTCAAAGCCGAGGTTGAGAAACTACGAGCGGCACTGGGAAAATACCCACAAGCAGCGGCGTCTCCTTCGTATTCATCAGGGAACGAGCAAGAGACGAGGAAGCGAAGCTGCTTAGATTTTTACACAGGAATTTTCGGGGTTGAAAAGTCAAGGATGATGGAGAAAGTTGATGAAGCTGTTGAAGAGCTGAAAACAATGGCTACCGCCGGCGACCCACTATGGGTCCGCAGCGTGGAGAGCGGAAGACAGATATTAAACTACGATGAGTACTTGAAAACCTTCCATTTCAACAATAATAATAATTCCAACACTCGTTCCCTCAAAACACACATTGAAGCCTCACGTGAGACTGCCCTTGTTTTCATGGACCCCTCTAGGTTGGTTCAAAGCTTCATGGATGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACAGTTGATGTTATTTGTAATGGAGAAGCTGCCAATTTGAATAATGGCGCAGTGCAATTGATGTTTGCAGAGGTGCAAATGCTTACACCATTAGTTCCCACGAGAGAAATGTATTTCATTCGCCATTGCAAGCAGCTCGATGCCGAACAATGGGCGATAGTCGATGTTTCGATTGAAAACATTGAAGATAACAATAATATCGATGCATCGTTGGTAAAATACAAAAAACGTCCATCTGGTTGCATCATTAAGGATGAATCTAATGGTCATTGCAAGGTAACAATGGTGGAACATTTGGAATGTGAAAAAAACAAAGTTCACAACTTGTATAGAAACATAGTGAACAATGGCACTGCCTTTGGGGCAAGACATTGGATGGCAACTCTCCAACTCCAATGTGAACGCCTTGCTTTCTTCATGGCAACCAACATCCCCATGAAAGACTCAACTGGAGTTGCAACACTAGCTGGAAGAAAAAGCACATTAAAGTTGGCACAGAGAATGAGTTCAAGCTTCTCCCAAGCAATTGCAGCTTCAAGTTATCAAACATGGACCAAAGTTGTGGGGAAAACAGGGGAAGACATTAGGGTTTGTTCAAGGAAGAATCTTAGTGACCCTGGTGAGCCCATTGGAGTCATTTTGTGTGCAGTTTCTTCTCTTTGGTTGCCTCTTTCTCCCCATCTTCTCTTTGATTTTTTCAGAGATGAATCTCGTCGAAATCAGTGGGACGCCATGTTTGGTGGAGATAAAGTTAAGTCCATTGCAAATTTAGCTAAAGGACAGGATCGAGGCAACTCAGTTACCATTCAAACAATAGGATCAAAAGAGAGCAACAACATGTGGATCCTACAAGACAGCTCCACAAACTCATCGGAATCCATGGTGGTATACTCTGGAGTAGACATTAGCAGCATGCAGTCAGTGATGTCTGGTTGTGATTCCGGCAGCGTCGCCATCCTCCCTTCAGGCTTTTCAATTCTCCCCGACGGCGCCGACTCCCGGCCGCCCCTCCTCATCACTCGTCGTAAAGACGACAAAGCTTCCGACAATCATGGCGGTGTTCTACTCACCGCGGCGGTCCAAATCCTCACCGATACGTCTCCCTCTACAAACCCGACCATGGATTCCATTGAGTACGTTAAAAGCATCATTTGTTGTACGCTCAAAAATATTAGAACCAGCATGTGCTGTGAGGATGATTGA 2316 46.03 MGADMSNNNNTNRLAFTKDFFSSPALSLTLAGIFRRGEVAEKGDVEMEEVDDGSGGARRDDTAAEVSSENSGPVRSRSDDDGFDGGGAHDENEDGVDHGCHVKRRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENTLLKAEMEKLREEIKGMREICRKKVGCPNCGTADAGEDHVAFTTTEQLRIKNAKLKAEVEKLRAALGKYPQAAASPSYSSGNEQETRKRSCLDFYTGIFGVEKSRMMEKVDEAVEELKTMATAGDPLWVRSVESGRQILNYDEYLKTFHFNNNNNSNTRSLKTHIEASRETALVFMDPSRLVQSFMDENQWKEMFPFMISKAATVDVICNGEAANLNNGAVQLMFAEVQMLTPLVPTREMYFIRHCKQLDAEQWAIVDVSIENIEDNNNIDASLVKYKKRPSGCIIKDESNGHCKVTMVEHLECEKNKVHNLYRNIVNNGTAFGARHWMATLQLQCERLAFFMATNIPMKDSTGVATLAGRKSTLKLAQRMSSSFSQAIAASSYQTWTKVVGKTGEDIRVCSRKNLSDPGEPIGVILCAVSSLWLPLSPHLLFDFFRDESRRNQWDAMFGGDKVKSIANLAKGQDRGNSVTIQTIGSKESNNMWILQDSSTNSSESMVVYSGVDISSMQSVMSGCDSGSVAILPSGFSILPDGADSRPPLLITRRKDDKASDNHGGVLLTAAVQILTDTSPSTNPTMDSIEYVKSIICCTLKNIRTSMCCEDD 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 26905000 26913569 + CaPI482276_07g012520.1 Cam07g1252 131545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1252 771 MobiDBLite consensus disorder prediction 39 65 - -
Cam07g1252 771 FunFam Homeobox-leucine zipper protein HDG1 89 178 - -
Cam07g1252 771 SUPERFAMILY Bet v1-like 270 507 - -
Cam07g1252 771 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cam07g1252 771 MobiDBLite consensus disorder prediction 39 112 - -
Cam07g1252 771 Coils Coil 161 188 - -
Cam07g1252 771 FunFam Homeobox-leucine zipper protein GLABRA 2 276 505 - -
Cam07g1252 771 SUPERFAMILY Bet v1-like 529 703 - -
Cam07g1252 771 Gene3D - 94 175 - -
Cam07g1252 771 Gene3D - 278 505 IPR023393 -
Cam07g1252 771 SUPERFAMILY Homeodomain-like 93 163 IPR009057 -
Cam07g1252 771 Coils Coil 213 233 - -
Cam07g1252 771 Pfam Homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cam07g1252 771 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677(InterPro)
Cam07g1252 771 SMART HOX_1 104 166 IPR001356 GO:0003677(InterPro)
Cam07g1252 771 SMART START_1 275 506 IPR002913 GO:0008289(InterPro)
Cam07g1252 771 MobiDBLite consensus disorder prediction 74 101 - -
Cam07g1252 771 ProSiteProfiles START domain profile. 267 509 IPR002913 GO:0008289(InterPro)
Cam07g1252 771 CDD homeodomain 105 160 IPR001356 GO:0003677(InterPro)
Cam07g1252 771 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 92 768 IPR042160 -
Cam07g1252 771 Pfam START domain 279 506 IPR002913 GO:0008289(InterPro)
Cam07g1252 771 CDD START_ArGLABRA2_like 271 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0223 Cam-Chr6:4022139 Cam07g1252 Cam-Chr7:26905000 4.20E-149 dispersed
Cam07g1252 Cam-Chr7:26905000 Cam09g1150 Cam-Chr9:12205998 3.40E-121 dispersed
Cam07g1252 Cam-Chr7:26905000 Cam09g0191 Cam-Chr9:2666975 1.60E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52315 PF01852 START 1.10E-54 CL0209 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1252 K09338 - csv:101221341 1314.67