Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1294 ATGGCGAAACAACAAAAGAAGTTTAGAGGAGTGAGGCAACGGCGATGGGGCTCATGGGTCTCCGAGATTCGTCATCCTCTTCTGAAGAGAAGGGTTTGGTTGGGAACGTTTGAAACGGCCGAAGACGCGGCTCGAGCCTACGATGAGGCCGCCGTTCTCATGAGTGGTCCAACTGCAAAAACCAACTTTCCAATGTCGACCGCCTTAGTTCAAAGCGAAGCTAGAAATATTCCTCCATTTTCGTCATTGTCGACAATTCTCAACACTAAACTTCGCAAGTGTTGGAAATCTTTTCCTCCTTCTCTAACTTGCCTTCGTCTCGACGCCGAGAGTTGTCGCATTGGCGTTTGGCAGAGGCGTGCAGGACGCTGTCGAGTGGTCGACTCGAACTGGGTGATGATGGTGGAGCTCGAGAAGAAAAAGAATGACGGATTCCGAGTAACGGATGAGTCGCCGGAAAAGGGTGCGGAAGATCAGTTGAGACTTTCAGATGGGGCAGAAAGTTTAGATGAGGAAGAAAGAGCTGCTTTGCAAATGATTGAAGAACTTTTGAATAAAATATGA 564 48.4 MAKQQKKFRGVRQRRWGSWVSEIRHPLLKRRVWLGTFETAEDAARAYDEAAVLMSGPTAKTNFPMSTALVQSEARNIPPFSSLSTILNTKLRKCWKSFPPSLTCLRLDAESCRIGVWQRRAGRCRVVDSNWVMMVELEKKKNDGFRVTDESPEKGAEDQLRLSDGAESLDEEERAALQMIEELLNKI 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27307607 27308442 - CaPI482276_07g012940.1 Cam07g1294 131587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1294 187 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 126 IPR050913 -
Cam07g1294 187 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 Pfam AP2 domain 7 51 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 Coils Coil 166 186 - -
Cam07g1294 187 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Cam07g1294 187 MobiDBLite consensus disorder prediction 144 167 - -
Cam07g1294 187 CDD AP2 6 66 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam07g1294 187 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1854 Cam-Chr5:27494329 Cam07g1294 Cam-Chr7:27307607 5.00E-50 dispersed
Cam06g1226 Cam-Chr6:23555178 Cam07g1294 Cam-Chr7:27307607 2.30E-43 dispersed
Cam07g1294 Cam-Chr7:27307607 Cam11g0245 Cam-Chr11:3969586 1.10E-44 dispersed
Cam05g1815 Cam-Chr5:27029551 Cam07g1294 Cam-Chr7:27307607 2.80E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52318 PF00847 AP2 2.90E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1294 - - - 0.0