Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1350 ATGGACACAGAGGAAGCTCCATCGACACCGGTGACGCCGGGGACTCCCGGGGCTCCGCTGTTTGGACGAGTGAAGGATAATCAGCATGGAAGTGAGAATGGTAAAAGATCTCTTCTCAAGAGCTGCATCTCTTTCAATGTTGATGATAATTGGGGCAGTGAAGAAGGAGGCTTATCTAAACTAGTCTCTTCTTGTTCATTGCCGTACCCTCCTGTCTCACTTGCAAGAAAGGTGGGAGCGGAGTTCATAGGTACTTCGATACTCATCTTTGCCGGAACCGCCACGGCCATCGTGAACCAAAAGACGAAAGGAACCGAAACACTGATTGGGCTGGCGGCCTCCACCGGCCTTGCGGTGATGATTGTGATCTTGTCGACGGGTCACATCTCTGGAGCCCATCTGAATCCGGCCATCACCATTGCTTTTGCTGCGTTGAAGCAGTTTCCATGGAAGCATGTGCCAGTGTATATTGGAGCTCAAATGGTGGCTTCTTTGTGTTCTTCTTTTGCATTGAAATGGATCTTTGATCCCATAATGGGAGGAGGAGCCACTGTTCCTTCATGTGGAAATGCCCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTCGTCATCACTGCTGTCGCTACTGACACTCGGGCTGTGGGAGAATTGGCGGGAATCGCGGTAGGAGCAACCGTTATGCTCAATGTACTCATCGCCGGACAAACAACTGGAGCTTCAATGAATCCAGTAAGAACACTGGGGCCAGCCATTGCTGCAAACAACTTTAGAGCCATTTGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCGACAAAGATGGCAATTCACGCTTGCCTTCTACTGCAGGAAGCTTTCGAGGATGA 915 49.51 MDTEEAPSTPVTPGTPGAPLFGRVKDNQHGSENGKRSLLKSCISFNVDDNWGSEEGGLSKLVSSCSLPYPPVSLARKVGAEFIGTSILIFAGTATAIVNQKTKGTETLIGLAASTGLAVMIVILSTGHISGAHLNPAITIAFAALKQFPWKHVPVYIGAQMVASLCSSFALKWIFDPIMGGGATVPSCGNAQAFALEFIISFNLMFVITAVATDTRAVGELAGIAVGATVMLNVLIAGQTTGASMNPVRTLGPAIAANNFRAIWIYLTAPILGTLCGAGIYTAVKLPDKDGNSRLPSTAGSFRG 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 27852853 27856960 - CaPI482276_07g013500.1 Cam07g1350 131643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1350 304 MobiDBLite consensus disorder prediction 1 33 - -
Cam07g1350 304 Gene3D Glycerol uptake facilitator protein. 69 293 IPR023271 -
Cam07g1350 304 FunFam Aquaporin NIP2-1 65 295 - -
Cam07g1350 304 SUPERFAMILY Aquaporin-like 72 290 IPR023271 -
Cam07g1350 304 PANTHER AQUAPORIN NIP2-1 68 289 IPR034294 -
Cam07g1350 304 PRINTS Major intrinsic protein family signature 196 214 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g1350 304 PRINTS Major intrinsic protein family signature 115 139 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g1350 304 PRINTS Major intrinsic protein family signature 227 249 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g1350 304 PRINTS Major intrinsic protein family signature 264 284 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g1350 304 PRINTS Major intrinsic protein family signature 76 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g1350 304 PRINTS Major intrinsic protein family signature 152 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cam07g1350 304 ProSitePatterns MIP family signature. 133 141 IPR022357 -
Cam07g1350 304 Pfam Major intrinsic protein 73 281 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0114 Cam-Chr1:1420264 Cam07g1350 Cam-Chr7:27852853 1.10E-88 dispersed
Cam01g0115 Cam-Chr1:1427671 Cam07g1350 Cam-Chr7:27852853 2.40E-79 dispersed
Cam07g1350 Cam-Chr7:27852853 Cam10g1177 Cam-Chr10:25037874 3.20E-54 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1350 K09874 - csv:101207376 574.704