Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1412 ATGTCCTTAAAATGTGCCAAAGGGAGGAAGTGGAGGCCGGTGGAGCGTTACAGTTTTGCACTTACTCAACGGACAACACTTGTAGTTCTTCTTCTTCGTCGTCTTCTTCCTGGGAAATCCTTTATAATCCCCATCGACCTTTCATTCTTCTTCAAATTACAACTGGGTTGGGCAGGAGATGAACTTTACGCTGAGCTATGGAGAGTCTCGGCTGGGCCTCTTGTGGAAATTCCTCGAGTTAATGAGAAGGTTCTTTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTTCCTTTATTTAATCTTTCCTCCAAAATTCTCTGTCAAGTAGTTGATACCCGGCTGCTGGCAGAGCAGGACAGTGATGAGGTTTATGCACAGATAACTTTAATGCCAGAAGCAAATCAAGAGTTACCTACGAGTCTCGAACCTTCACCCCCAGAGTGTCGAAAACCGAAAGTCCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGGTTCTCCGTGCTCCGGAAACATGCCACCGAATGCCTGCCTCCATTGGATATGACCCAGCAGACCCCAACTCAGGAACTCGTAGCCAAAGATCTTCATGGTTTCGAGTGGCGATTCAAGCATATATTTAGGGGTCAACCACGACGGCATTTGCTGACGACCGGATGGAGCACCTTTGTTACTTCTAAGAGACTAGTTGCTGGAGATTCTTTTGTGTTCTTGAGGGGGGAAAATGGGGAATTGCGAGTTGGAGTGAGGCGTCTTGCTCGCCAACAGAGCAGCATGCCTTCATCTGTGATTTCAAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCCGTGTCAACTCAAACTCGCTTTGTTGTCTATTATAAGCCAAGGGCAAGCCAGTTTATCGTCAGCTTGAATAAGTACATAGAAGCGATGAACTATAAGTTCTCAGTTGGGATGAGGTTCAAGATGAGGTTTGAGGGAGAGGAGTCTCCAGAGAGAAGGTTTTCGGGTACCATAGTTGGAGTTGACGACATGTCTCCTCACTGGACCAATTCAGACTGGCGATCACTGAGAATTCAATGGGATGAACTTGCATCTATTCAGAGACCTGATAGAGTTTCACCATGGGAGATTGAACCTTTTGTGGCTCCTACGTCCCCAAGCATTCCGCACTCTATTTCCATAAAGAATAAAAGGCCTCGGCCACCACTTGAAATTCTTGATTCTGATAATTCAACTGTAACAACTCTAAGACATCCAGGATCATCTCAATCACATGATGATAGAACACAGCTGAGTGTTGCTGCTGCTGAAATTAAAAGATTTGAAAATCATGCAACATGGCATTACAAGCAAACGGATGTTAGCAGCAATGGGAATTCTGTATCAAGGAGTCCGATGGAGGGCTCTTGGTTAACTTCTCCAAATGGGAGTGTTTCTCAGCATCGGTTACAGGAATTGACAGATGACCGTAAGAGCAGTTCTGTTTGGTCAACGGTCTTTCCAGGAGTGCTGGCATCAAACTCGACATGTCCAACTCCACGCCCATCAAATCCAAAGAGTGACCAAGTACATGACCTTGGGGAAAAGGGGAGGAAAACTGAAGTGGCTCCAAGCTGTCGCTTGTTCGGGATCGAGCTCATCAATCATTCTAAGAGCCCAGTTCCTCCTGAAAGGGTGCCCGATCAACCAATTAGCGCACCAAATGAAATCACTGATGCAGAGCAGAACTCAAACCTGCCAAAGGCTTCTAAAGAAAGAAAATTAGGACTTTTACAAGTACCTCCTAAAGAGATCCAGCACAAGCAGAACAGCTCGACCAGCAGCCGAAGCCGTACTAAGGTACAAATGCAGGGGATGGCTGTCGGACGTGCGGTAGACCTTACCACATTGGAGGGGTATGGCCAACTCATTGATGAACTAGAAAAGATGTTTGATATCAAGGGAGAACTTCGCCCTCGTAATAAGTGGGAGATCGTCTTCACTGACGATGAAGGAGATACAATGCTCATGGGCGACTACCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCAAGTCAGGATGTGAAGATGAGTTCGGGTAGCAAACTTGCGATGTCTACAATCGAATGTGACGGGACTGTAATAACCTCGGAGTCAGCCGACAGCTGA 2208 46.2 MSLKCAKGRKWRPVERYSFALTQRTTLVVLLLRRLLPGKSFIIPIDLSFFFKLQLGWAGDELYAELWRVSAGPLVEIPRVNEKVLYFPQGHMEQLEASTNQELNQKLPLFNLSSKILCQVVDTRLLAEQDSDEVYAQITLMPEANQELPTSLEPSPPECRKPKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELVAKDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLARQQSSMPSSVISSHSMHLGVLATASHAVSTQTRFVVYYKPRASQFIVSLNKYIEAMNYKFSVGMRFKMRFEGEESPERRFSGTIVGVDDMSPHWTNSDWRSLRIQWDELASIQRPDRVSPWEIEPFVAPTSPSIPHSISIKNKRPRPPLEILDSDNSTVTTLRHPGSSQSHDDRTQLSVAAAEIKRFENHATWHYKQTDVSSNGNSVSRSPMEGSWLTSPNGSVSQHRLQELTDDRKSSSVWSTVFPGVLASNSTCPTPRPSNPKSDQVHDLGEKGRKTEVAPSCRLFGIELINHSKSPVPPERVPDQPISAPNEITDAEQNSNLPKASKERKLGLLQVPPKEIQHKQNSSTSSRSRTKVQMQGMAVGRAVDLTTLEGYGQLIDELEKMFDIKGELRPRNKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKMSSGSKLAMSTIECDGTVITSESADS 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28640738 28645939 + CaPI482276_07g014120.1 Cam07g1412 131705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1412 735 MobiDBLite consensus disorder prediction 521 549 - -
Cam07g1412 735 Gene3D - 164 268 IPR015300 -
Cam07g1412 735 SUPERFAMILY DNA-binding pseudobarrel domain 154 296 IPR015300 -
Cam07g1412 735 FunFam Auxin response factor 165 269 - -
Cam07g1412 735 FunFam Auxin response factor 328 399 - -
Cam07g1412 735 Gene3D - 328 399 - -
Cam07g1412 735 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 61 711 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam07g1412 735 MobiDBLite consensus disorder prediction 467 495 - -
Cam07g1412 735 Pfam Auxin response factor 293 371 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cam07g1412 735 Pfam B3 DNA binding domain 167 267 IPR003340 GO:0003677(InterPro)
Cam07g1412 735 SMART B3_2 167 269 IPR003340 GO:0003677(InterPro)
Cam07g1412 735 MobiDBLite consensus disorder prediction 612 628 - -
Cam07g1412 735 Gene3D - 619 711 - -
Cam07g1412 735 ProSiteProfiles PB1 domain profile. 624 705 IPR053793 -
Cam07g1412 735 MobiDBLite consensus disorder prediction 403 422 - -
Cam07g1412 735 MobiDBLite consensus disorder prediction 565 628 - -
Cam07g1412 735 Pfam AUX/IAA family 671 707 IPR033389 -
Cam07g1412 735 Pfam AUX/IAA family 614 660 IPR033389 -
Cam07g1412 735 SUPERFAMILY CAD & PB1 domains 618 700 - -
Cam07g1412 735 ProSiteProfiles B3 DNA-binding domain profile. 167 269 IPR003340 GO:0003677(InterPro)
Cam07g1412 735 CDD B3_DNA 165 267 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0178 Cam-Chr1:2125532 Cam07g1412 Cam-Chr7:28640738 5.90E-222 dispersed
Cam07g1412 Cam-Chr7:28640738 Cam11g0027 Cam-Chr11:1853117 1.80E-172 dispersed
Cam07g1412 Cam-Chr7:28640738 Cam09g0937 Cam-Chr9:9621923 8.00E-213 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52327 PF02362 B3 8.70E-22 CL0405 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1412 K14486 - csv:101213942 1224.15