Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1419 ATGGATCCGAAGCTAACTGAGGTATCGCAGCACTTTGAGCGCTTTAAAGCTGCTCTTGTTAGGCACGATTATGATTCTTGTAACAATCTCCTCTCTCAGCTGAAGGTTCTTTTAACTGGATTCAGAAGTCTTCCACCATTGTTTGAAGATACCCCCAATGCTGTTCATGAATTGACGGTAGCTAGGGATATATATGAGCATGCTGTGTTGCTTAGTGTGAAGGTTGAGGATCAAGATGCATTTGAAAGAGATTTCTTCCAATTGAAGCCTTACTATACTGATGCTCGTAACCGCCTTCCTCCATCCGCTCAGGAGCATCCCATCTTGGGTCTCAACCTTTTGAGGCTTCTTGTGCAGAACAGAATTGCTGAATTCCATACTGAACTTGAACTACTTTCCACCTCTGCTTTGGAGAACCCATGCATTAAACATGCTGTGGAGCTGGAGCAATCGTTTATGGAAGGGGCTTACAACCGTGTGTTGAGTGCTCGACAGACCGTGCCACATGAAACTTTTGGTTATTTCATGGACCTCCTTGCAAAGACTGTAAGAGATGAAATAGCCGGTTGCAGTGAGAAGGCATATGATTATCTTTCAATAAGTGATGCACGCCAAATGCTATTGTTTTCCTCTGACCAGGAACTTTTGGACTACGTCAAGGAGGAGCATCCCGAGTGGGAGATAACGAACGGGGTTGTATATTTCCAGAAGGCAAAAGAATCTGCACCTTGCAAGGAAATTCCTTCTCTTCAACTTATCAACCAAACACTCAGTTACGCGAGAGAGCTAGAGCGGATTGTATGA 804 44.28 MDPKLTEVSQHFERFKAALVRHDYDSCNNLLSQLKVLLTGFRSLPPLFEDTPNAVHELTVARDIYEHAVLLSVKVEDQDAFERDFFQLKPYYTDARNRLPPSAQEHPILGLNLLRLLVQNRIAEFHTELELLSTSALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETFGYFMDLLAKTVRDEIAGCSEKAYDYLSISDARQMLLFSSDQELLDYVKEEHPEWEITNGVVYFQKAKESAPCKEIPSLQLINQTLSYARELERIV 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28735365 28739035 + CaPI482276_07g014190.1 Cam07g1419 131712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1419 267 ProSiteProfiles PCI domain profile. 79 251 IPR000717 -
Cam07g1419 267 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 8 1 267 IPR006746 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0005838(InterPro)|GO:0006508(InterPro)|GO:0008541(PANTHER)|GO:0043161(PANTHER)
Cam07g1419 267 FunFam 26S proteasome non-ATPase regulatory subunit 5 237 - -
Cam07g1419 267 Pfam CSN8/PSMD8/EIF3K family 105 242 IPR033464 -
Cam07g1419 267 Gene3D - 4 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1419 K03031 - - csv:101207684 489.574
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g183 . . . . . . . . . . . . . . . . . . . . . . . . Cla07g01081 Cam07g1419 Cec07g1240 Cco07g1218 Clacu07g1143 Cmu07g1125 Cre07g1502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007132 3 1 1 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 37