Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1439 ATGGGGTCCAGTGGAAGTAAATCGTCGAGTAGTTCGCTGCCGGCGGCGGAGACTCTCTCGTGTTCTGGGAGAATCCGGAGGGGGAGATCCAAAAGCCGGAGAGTTTTCCAGTCTGCTTGCCTCGGTACCCCCTCTGGATCGCACCACAGCGACAATGACGATAATGATTCTGAAACTGAGAATAAAAAGAATGCTCATGATTATTCATCTTCAAATCAGACTGCTCAAGCATTAGATCAGATGAAAGTTGAGGGTTACAGAAGGGTTAAAGCTGAGGAATCTGTTGAAATGCCTTGCATATCATCAAACGTTGTGCTTGATGCATGGGATGAAGCAGGTGTTGCTGTTACAACCCCCAGAGCTGGAAGTACCTCTGCTCGGGTATCTTCCCTGCAGTCGTTGAACCCTTCAAGTAACTTCCTTTCTCGCTTTAGTTTCATTCCTGGTAATGTTAGCTTCAGACTAAGTAGAGCAAGCAGTTTAGGATCATCTAGATCTTATCCCGTGTCTTCAACAAATCTCTCAATGTTGAATGATGAAGACGAGCCTCATTTATCAGACAGACCTGCGAGAGGTGTGGGTGGTGAAGATGAAACTCAGCAAGGTAGGGACTTGCTTCCTGCATCACTAGCTAGTGAAACTCATACTCAATGTTATGGAGACAGGTCTGCTAATTTTAGGTTAAATACACAACCTTCTGGTCCTTCTGATAACTTACAAGACAATCAGTCAGTTTCTTCTACCCATGACATGGCTGGTTCTTGTGATAATTCTAGAGTAGGGCCAGATGGAAACCTTTCCCTTCCTCGAACTCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGACAGACGGGCTGGATCTAGGGAACCGGTTGAGCGCAATTTTCGTTTTAGTCGTACTCTTAGTGTTGGAAGACTCCGTGATAGAGTTCTTCGTCGATCTTCGTTATCTGACTTCACATTTTGTCCTCCTCAACAAGAGGGAGATGAGAGAGATGCAAGTCACAGTGGCGATGACCAACATGTATGGACTGCTGAGACAAGGACTTTGGCATCTGAAGATAATGGTATGACCTCGCCAACAACATCAGGTTATCCAGCTTCTAGTCTATCCAGTTCCCTGTTCAGCACCCAAGATTTTGATGTGGAAGCTACTCGACCTAGAGAAGCTAGGTATCACGATTTGCTGGAACATAGGTCAAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTTCGTGCCCTACAGCGGCTGGGAAGTCGCTTTGAGAACCTATCTGGGCATGAGAGATCGTGTATATTATCCGGTCAACATAGAACCGGTCATTGTACTTGTCGTATCAATAATCGTGACCCAAATATAAACGATAACACCAGTGCTAGAGCCAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTTTTATCCTCCCGCCCTGCATCTTCTATTGGCTCTCTGCCTGCACCGAACGATGTTGTAGATTCTTTGCCTGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAGCGAGGAAGCTGCCCAATGCTACATATGCCTGGTTGAGTATGAGGAAGGAGATAGCATGAGAGTGTTGCCTTGCCATCACGAGTTTCACGCAGCATGTGTCGACAAGTGGTTGAAGGAGATCCACAGGGTATGTCCACTCTGTCGAGGGGACATATGCAGCAGATCTGATGCGTTATCAGACGATGTCAAGTGA 1767 45.44 MGSSGSKSSSSSLPAAETLSCSGRIRRGRSKSRRVFQSACLGTPSGSHHSDNDDNDSETENKKNAHDYSSSNQTAQALDQMKVEGYRRVKAEESVEMPCISSNVVLDAWDEAGVAVTTPRAGSTSARVSSLQSLNPSSNFLSRFSFIPGNVSFRLSRASSLGSSRSYPVSSTNLSMLNDEDEPHLSDRPARGVGGEDETQQGRDLLPASLASETHTQCYGDRSANFRLNTQPSGPSDNLQDNQSVSSTHDMAGSCDNSRVGPDGNLSLPRTLPENESSEIRQSDRRAGSREPVERNFRFSRTLSVGRLRDRVLRRSSLSDFTFCPPQQEGDERDASHSGDDQHVWTAETRTLASEDNGMTSPTTSGYPASSLSSSLFSTQDFDVEATRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGQHRTGHCTCRINNRDPNINDNTSARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDVVDSLPVKFYSKLQKHQSEEAAQCYICLVEYEEGDSMRVLPCHHEFHAACVDKWLKEIHRVCPLCRGDICSRSDALSDDVK 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 28966463 28969681 + CaPI482276_07g014390.1 Cam07g1439 131732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1439 588 MobiDBLite consensus disorder prediction 321 372 - -
Cam07g1439 588 Pfam Ring finger domain 530 573 IPR001841 -
Cam07g1439 588 MobiDBLite consensus disorder prediction 277 293 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 161 202 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 345 372 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 180 198 - -
Cam07g1439 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 578 IPR013083 -
Cam07g1439 588 ProSiteProfiles Zinc finger RING-type profile. 531 573 IPR001841 -
Cam07g1439 588 MobiDBLite consensus disorder prediction 49 65 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 1 79 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 224 293 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 224 254 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 161 179 - -
Cam07g1439 588 SMART ring_2 531 572 IPR001841 -
Cam07g1439 588 MobiDBLite consensus disorder prediction 330 344 - -
Cam07g1439 588 MobiDBLite consensus disorder prediction 1 18 - -
Cam07g1439 588 SUPERFAMILY RING/U-box 509 579 - -
Cam07g1439 588 FunFam Putative RING zinc finger domain superfamily protein 499 578 - -
Cam07g1439 588 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 582 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1335 Cam-Chr6:24778640 Cam07g1439 Cam-Chr7:28966463 1.60E-40 dispersed
Cam07g1439 Cam-Chr7:28966463 Cam09g1165 Cam-Chr9:12428542 7.10E-10 dispersed
Cam07g1439 Cam-Chr7:28966463 Cam01g1602 Cam-Chr1:29575895 4.10E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1439 - - - 0.0