Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1487 ATGCAATTGGTACCAAATCATGATGAAAATAAAGATGATATTCTGGAGCGTGCACCCATTTTAAGTCACTTGGATTTTCTGCCACAGTCTGTGGGATCATCATCCTCTGCTGAGATTGCTGAGATTATAGCTATAGGGAGAGAGAGTTCAGTTAGTGATGATGATTTACACAATCTTATTGTTGATGAAACTTGTCATCTGGTGAATGCAGACCAACCACAATGTCGTATATGCCTTGACACTGGAGGAGAAGATTTGATTGCTCCATGCCACTGCAAAGGCACTCAAAAGTATGTCCATAGATCTTGTCTTGATAATTGGAGGTCCACAAAGGAGGGCTTTGCTTTTGCTCATTGTACAGAGTGCAGAGCTATGTTCGTGTTACGTGCAAATGTCCCTCCTGATCGCTGGTGGTTGAGACTGAAGTTTCAATTTCTTGTTGCTAGGGACCATGCGTTCATTTTCATCATTGTTCAGCTGATTGTGGCATTCTTAGGAGTGTTGGTGTACAAATTTTACGGAGAGGAACTAAGGGAAATGTTTGGTTATGAAGAACACCCATATGGATTCTATGCCATGGCTGTCTTAGCTATCATCTTGGTTGGTTTACTCTATGGTTTCTTCATAGCCATTATATGCGGGCAGAGGATAAATGAACGCCACTACCATGTCCTCGCTAAGCAAGAACTGACAAAGGAATATATAGTTGAAGATCGAGAACATAACAAGAACGTTCCTGAATTAGACCCCAGTCACGTTATGGAGCTAAGGATGTTGGGCCTGTATTAA 789 41.7 MQLVPNHDENKDDILERAPILSHLDFLPQSVGSSSSAEIAEIIAIGRESSVSDDDLHNLIVDETCHLVNADQPQCRICLDTGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFAHCTECRAMFVLRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLIVAFLGVLVYKFYGEELREMFGYEEHPYGFYAMAVLAIILVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYIVEDREHNKNVPELDPSHVMELRMLGLY 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29482538 29484300 - CaPI482276_07g014870.1 Cam07g1487 131780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1487 262 Pfam RING-variant domain 75 122 IPR011016 GO:0008270(InterPro)
Cam07g1487 262 SUPERFAMILY RING/U-box 70 126 - -
Cam07g1487 262 SMART ringv_2 74 123 IPR011016 GO:0008270(InterPro)
Cam07g1487 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 127 IPR013083 -
Cam07g1487 262 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 194 262 - -
Cam07g1487 262 CDD RING_CH-C4HC3_MARCH 75 123 - -
Cam07g1487 262 ProSiteProfiles Zinc finger RING-CH-type profile. 67 129 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1283 Cam-Chr6:24212788 Cam07g1487 Cam-Chr7:29482538 4.70E-37 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1487 - - - 0.0