Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1528 ATGGCCGTCTCCAAATTCTCCGTCGCCGTCCTCCTCTTAGCCTTTTTATTCATTAACGGAGCCGAATCTCAGTTTCTTTGCAAAAGCTCCTCCTGCAATGGAGTTTCCTCGCCGGACGTTCGATTTCCGTTCCGACTGAAGAATTCGCAGGATTCTCGGTGTGGATACCAGCCAGATTTCGACCTGTTCTGCAACAATCGAAACCAGACGATTCTGAATCTCCCGAACGCCGGAGACCTCGTAGTGGAGATTATCGATTACAGGTTTCAGAGGTTGTGGATCAACGATCCGGATCAATGCTTTCCGAGACGAATACTAATAGACTCTTTCAATTTAGAGAACTCGCCGTTCATTTATAATTATCGATTCGATGAATTCACCGTTCTCAACTGCTCCTATTACGTCCAAACGCTACCGTTCGATCGCGTCCGGAAGATCAAATGTATGAGCGGCGGAAACCACACTGTAATCAATGTGCCAAACAGAGACCTAAAGGCGGTTACAGATTTCCTACCGTCGCCGTGTAAAGTGATTGCGACGAAGAAGCTTCCGTTGACAGGAATGGAGCTTGAAGAAGGAATGGTGGTGAGGTGGAGTGAGCCGGCTTGCGGAAACTGCGAGACGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGGTGAAGTCGTGTGTTTCAATCTTCCAAAAAGCGGAATTCCACGAGGTGCAAAATATGGGTTGATCATCGGTGTGGGAATCCCAGGAGTCCTCTTCATAATTGGGTTGGTCTGTTACATTTGTGGCAGGTTCAAGGCCTTTGCCCGACCCAATCGTCCAACATCACACCTTTCTCTTTCGTTGGGCCACCAACCCACTTTTACCAAAGCAGGCCTCGATGGTTCGACAATTGAATCATTCCCCAAGACAACACTGGGGCAGAGCAGACGACTTCCAAAGTCCAACGACACCACATGCGCCATATGCTTGTCAGAGTACCAGTCAAAGGAGACAATTAGAACCATACCAGATTGTGGTCACTTTTTCCATGCCAAATGCATTGATGAGTGGCTTAAATTGAATGCCACGTGTCCAGTCTGTCGGACCTCGCCCGAGGATTCCTCTTGCACCTCCACGCCTTCTCAATCCATGTCAGTGCCAACGTCGCCGCAATCGGTAGCATCATTGCCACATCATCACTAG 1182 48.82 MAVSKFSVAVLLLAFLFINGAESQFLCKSSSCNGVSSPDVRFPFRLKNSQDSRCGYQPDFDLFCNNRNQTILNLPNAGDLVVEIIDYRFQRLWINDPDQCFPRRILIDSFNLENSPFIYNYRFDEFTVLNCSYYVQTLPFDRVRKIKCMSGGNHTVINVPNRDLKAVTDFLPSPCKVIATKKLPLTGMELEEGMVVRWSEPACGNCETRGGDCGFKSNSSGEVVCFNLPKSGIPRGAKYGLIIGVGIPGVLFIIGLVCYICGRFKAFARPNRPTSHLSLSLGHQPTFTKAGLDGSTIESFPKTTLGQSRRLPKSNDTTCAICLSEYQSKETIRTIPDCGHFFHAKCIDEWLKLNATCPVCRTSPEDSSCTSTPSQSMSVPTSPQSVASLPHHH 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 29911863 29915710 - CaPI482276_07g015280.1 Cam07g1528 131821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1528 393 Pfam Ring finger domain 318 361 IPR001841 -
Cam07g1528 393 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 365 IPR046948 -
Cam07g1528 393 Pfam Wall-associated receptor kinase galacturonan-binding 27 96 IPR025287 GO:0030247(InterPro)
Cam07g1528 393 ProSiteProfiles Zinc finger RING-type profile. 319 361 IPR001841 -
Cam07g1528 393 SMART ring_2 319 360 IPR001841 -
Cam07g1528 393 MobiDBLite consensus disorder prediction 368 393 - -
Cam07g1528 393 SUPERFAMILY RING/U-box 313 364 - -
Cam07g1528 393 Pfam Wall-associated receptor kinase C-terminal 187 226 IPR032872 -
Cam07g1528 393 CDD RING-H2_EL5-like 319 361 - -
Cam07g1528 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 366 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1528 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1528 Cam-Chr7:29911863 Cam08g1520 Cam-Chr8:21408286 5.70E-24 dispersed
Cam01g0669 Cam-Chr1:7370625 Cam07g1528 Cam-Chr7:29911863 6.20E-09 transposed
Cam01g1548 Cam-Chr1:29029853 Cam07g1528 Cam-Chr7:29911863 2.40E-19 transposed
Cam05g0209 Cam-Chr5:2119364 Cam07g1528 Cam-Chr7:29911863 7.10E-11 transposed
Cam09g2180 Cam-Chr9:36313536 Cam07g1528 Cam-Chr7:29911863 1.90E-10 transposed
Cam10g1627 Cam-Chr10:30085983 Cam07g1528 Cam-Chr7:29911863 6.70E-09 transposed
Cam10g1782 Cam-Chr10:31897858 Cam07g1528 Cam-Chr7:29911863 2.20E-17 transposed
Cam05g1051 Cam-Chr5:9529107 Cam07g1528 Cam-Chr7:29911863 1.30E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g132 . Blo03g00248 Bda06g00146 Bda08g00465 . Bpe07g00072 . . . Cmo16g00597 . . . . . Cpe14g00462 . . . . . . . . Cla07g01426 Cam07g1528 Cec07g1624 Cco07g1584 Clacu07g1515 Cmu07g1486 Cre07g1863 . Cone12ag0251 Cone6ag0851 Cone9ag0852 . . . . . Blo19g00367 . . Bpe08g01520 . . Bma12g00607 . . . . Cma16g00545 . . . . . . . . . . . . . . . . . . . Csa04g00657 Chy07g01154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35