Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1566 ATGGTGTTTTCTCGAGCTTCCCAGCTCGTCGAAATGCAACGAGGAGACTGTTTTACACAGCCACCACCCGTCTCCGGTGGGTTTCCGCTGTTTCGCGACGTTCCGACAGACAACATGTCGTTCGATGCGACGAGTAGTATGAAGGACGAGGACATCGGCGTTCCGCTTAGTAAAAGATTTCATGTTGATGAGTCTGCTAGGAATGGAGTAGATGGGTTGGAGAAGAAGGAGGCTGTGATGGCGGGAACGACGACAACAGGACGGGGAGATTATGATAAGAGAAAGAAGATGAGAAGCCGGAGATTTGCTTTTCAAACGAGAAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAGAAGGCTGTGAAGAACAACAAATTCCCAAGAAGTTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTCCAAAGGCTAACTAGAGATGAAGGGGTGGTTGTGACAACCTATGAAGGCATTCATTCTCATCCTATTGAGAAATCCACTGACAACTTTGAGCATATTTTGAGTCAGATGCAAATTTACACTTCTTATTGA 579 44.56 MVFSRASQLVEMQRGDCFTQPPPVSGGFPLFRDVPTDNMSFDATSSMKDEDIGVPLSKRFHVDESARNGVDGLEKKEAVMAGTTTTGRGDYDKRKKMRSRRFAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTRDEGVVVTTYEGIHSHPIEKSTDNFEHILSQMQIYTSY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30354969 30359296 + CaPI482276_07g015660.1 Cam07g1566 131859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1566 192 Gene3D WRKY domain 98 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1566 192 SMART WRKY_cls 113 172 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1566 192 Pfam WRKY DNA -binding domain 114 171 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1566 192 FunFam WRKY transcription factor 57 99 173 - -
Cam07g1566 192 SUPERFAMILY WRKY DNA-binding domain 105 172 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1566 192 ProSiteProfiles WRKY domain profile. 108 173 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cam07g1566 192 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 77 173 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g0151 Cam-Chr5:1675451 Cam07g1566 Cam-Chr7:30354969 8.70E-28 dispersed
Cam05g1512 Cam-Chr5:19018391 Cam07g1566 Cam-Chr7:30354969 7.90E-47 dispersed
Cam07g1566 Cam-Chr7:30354969 Cam11g0745 Cam-Chr11:9273109 2.40E-44 dispersed
Cam07g1566 Cam-Chr7:30354969 Cam07g0799 Cam-Chr7:20042763 4.50E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52341 PF03106 WRKY 9.30E-26 CL0274 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1566 - - - 0.0