Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1572 ATGAGAATACGGCAAAAGGAGCGTACGGTGTTCCGGTTAGAGAAAAGTGAGCGCGAGCGGCTGGCGATGGCGGAGGTTGTAGAAAGGGAAGAGGTGACTCTCCAGAAATTGAAGACGATGATGGCGGACTTTGCGAAAGAGAGAGACTGGGATCAGTTTCACAGCCCTAGAAATCTCCTCCTCGCTATGGTGGGTGAAGTGGGTGAGTTATCTGAGATATTCCAGTGGAAAGGGGAAGTTCCAAGAGGCCTTCCTGACTGGAAAGATGAAGAGAAACAACATCTTGGGGAAGAACTCTCAGATGTTTTGCTGTACCTTGTTAGGCTTGCTGATATTTGTGGGATTGATCTTGGCAAAGCAGTTCTAAGGAAGCTGGAGCTGAATGCCAAGAAATATCCAGTCAAGCTTTGCAAAGGGTCTTCACGAAAACACACAGAAATCAGCTGTTGTGAAGACGATTTCAATAAAAACGGTGGAAAGGAAGACCCCACCAAATAG 498 46.99 MRIRQKERTVFRLEKSERERLAMAEVVEREEVTLQKLKTMMADFAKERDWDQFHSPRNLLLAMVGEVGELSEIFQWKGEVPRGLPDWKDEEKQHLGEELSDVLLYLVRLADICGIDLGKAVLRKLELNAKKYPVKLCKGSSRKHTEISCCEDDFNKNGGKEDPTK 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30422771 30426646 + CaPI482276_07g015720.1 Cam07g1572 131865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1572 165 Coils Coil 27 47 - -
Cam07g1572 165 Pfam MazG-like family 66 146 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Cam07g1572 165 CDD NTP-PPase_RS21-C6_like 38 128 IPR025984 GO:0009143(InterPro)|GO:0047429(InterPro)
Cam07g1572 165 Gene3D - 22 138 - -
Cam07g1572 165 SUPERFAMILY all-alpha NTP pyrophosphatases 33 146 - -
Cam07g1572 165 PANTHER - 27 147 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1572 K16904 - - csv:101213795 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g1729 Cam-Chr6:28593615 Cam07g1572 Cam-Chr7:30422771 1.00E-38 dispersed
Cam07g1572 Cam-Chr7:30422771 Cam09g0803 Cam-Chr9:8231330 1.10E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1065 Blo01g00274 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe05g01074 . . . . . . . . . . . . . . . . . . . Cla07g01472 Cam07g1572 Cec07g1671 Cco07g1632 Clacu07g1563 Cmu07g1531 Cre07g1907 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002028 4 1 2 4 4 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 1 2 2 1 2 3 2 1 65