Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1621 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTAACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAACTTTCTGTTCTTTGTGATGCCGAAGTTGCTCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGCTAGGTTTGAGTCTTTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTTGAGCAACTGGAGCGTCAGCTTGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTGTCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGTATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACCACTGCTCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 741 43.18 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTAPTHAQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 30810847 30818218 + CaPI482276_07g016210.1 Cam07g1621 131914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1621 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 FunFam MADS-box transcription factor 1 13 87 - -
Cam07g1621 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 Coils Coil 150 170 - -
Cam07g1621 246 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam07g1621 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 196 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cam07g1621 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam07g1621 246 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam07g1621 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam07g1621 246 Coils Coil 121 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1193 Cam-Chr4:26004192 Cam07g1621 Cam-Chr7:30810847 6.20E-72 dispersed
Cam06g0013 Cam-Chr6:1933615 Cam07g1621 Cam-Chr7:30810847 5.00E-19 dispersed
Cam06g0014 Cam-Chr6:1946685 Cam07g1621 Cam-Chr7:30810847 4.40E-83 dispersed
Cam06g0206 Cam-Chr6:3872937 Cam07g1621 Cam-Chr7:30810847 3.50E-56 dispersed
Cam07g1621 Cam-Chr7:30810847 Cam08g1503 Cam-Chr8:21251092 2.50E-65 dispersed
Cam07g1621 Cam-Chr7:30810847 Cam07g1622 Cam-Chr7:30833164 1.30E-42 tandem
Cam11g1624 Cam-Chr11:29002783 Cam07g1621 Cam-Chr7:30810847 2.30E-27 transposed
Cam04g1192 Cam-Chr4:25990888 Cam07g1621 Cam-Chr7:30810847 1.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52346 PF01486 K-box 2.70E-27 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1621 K09264 - csv:101208204 472.241