Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1679 ATGAGCTTCAAACAAAGTCCAGAACCTTCTTCTTCTGATCTGTCAGATCGGGCTTTTGGTTTCAACCCCACTTATCGTAGTCGATTCAATCAGATCTACTTCACCCTTCTTACTGCTGATTTTTGTGCTACAATTTCTGGGCTTAATGCAAGGGCATTGGCCAGAGACAGGGTTGAGAGTCTTATCTTGTTAGGTGGGATGTTGTTTCCAAGTGGTGCAACTGCAATGTGGCTAGGTTGGGTTGGGATGAAGAAGGCCTTTGATCAAACTGTTAGAGACTTGAAAAGAGAGGTCAATAAGACCGTGCTCAAAATCCCTAAAATTGAGCAGAAGGTTTTGGATGCCACTAGCAATGAGCCTTGGGGTCCTCATGGATCCCTTCTTGCAGATATAGCACAGGCAACTAGAAATTATCATGAATATCAAATGATCATGGGAATACTCTGGAAGCGGATTAATGATACCGGAAAGAATTGGAGGCATGTCTACAAGGGTTTGACCGTTTTGGAGTACTTGGTGGGTCATGGGTCAGAGCGTGTCATAGATGACATCAGAGAACATGCATATCAGATATCAACCTTATCTGATTTTCAATACATCGACTCCAATGGGAGGGACCAAGGTAACAATGTTAGAAAGAAATCTCAAAATCTTGTTGCCCTTGTAAATGATAAAGAAAGGATCATTGAGGTCAGACAGAAGGCTGCTGCTAACAGGGACAAGTTTCGCAGCCCATCATCTATGGGCAGTATGTATAGACCAAGTTCAGGAGGATATGATGACCGCTATGAAGGACGATATGGAAGCCGTGATGGAGACAGAAATGTTGATTCTTATGGGAAGGAAAGAGATTATGGTTTTAGAGATGATCGTTCTGGCAGAAATGAGGATTCATATGGTCGTGATTATGAAGAACGCTATAACAGAGATGGTTTTAAGGATGATGATTATCGAGGAAGAAGCCGAAGCATTGATGACTATCAGTATGGTTCAAGGAGCAGGAGCTCTGACAGAGATGGAGAACGTACATTTGATGATGATGGTCAAGCTTCTTCTCGCAACAATGGTGCCAGAGCTGACGAGCAAGCTCAGGATGGAAGGCAGCTTGAACGTAAATTTTCAGAACAGAATATTGGTGCTCTGCCAAGTTATGAAGAAGCTGTGAATGAATCTGGAAGCACTGGGCATAGTCAAAGAGATGTAGAAGCTCCAGCAACTACTGCTCCAAGAACTTTTCCTCCGCCCACGCCCAGTACTCCAAGCCAGCTAACTACTCATGCAACCACTGCATCCCCGCCTACCCAGGGACTTGATGGTTCTGATGAATTTGACCCCCGTGGTTCAGTTCCAGTTCCAGCTGCTCCAAATGCCTCGAGTAGTTTGGAGACAAATTTATTTGACTCCTTGGCCTTAGTGCCTGTTGGGCCAGTAACATCCAGTGCAGACTCTGAGAGTCATGTTCAGACAAACTCTGCTGTGGGATCCTATACTCAAACTCAGACTTTTGAAGACCCATTTGGTGACTCCCCTTTTAAAGCCATTTCTTCCTCTGGAGTCCAAGATCAAGCACATTTTCACCGTGGGGAATCATTTTCTGCAGCAACTTACTCCACACCAGACATCCCTGTTCAACCTCAACCGAATTTGCATCACCCTCGTGAAGAAACTCTGCAACATCACAATATTGGTGTACTGGCTGATCTCCTTCCTCCTGAAACTTTACCAGCTGCTGTTTCACAGCCCACATTTACAATATCAAACCAACCAGCACAGCCAAATTTTCAAGCTGCATCTGACCTGCCTGCACAGCCAAATTCTAACTTGGGGAATTATCAGCAAGATGGAAATACTGGTCCTGTGAATTTTCAAAATCAAACAGAACCAGGGAGAGAGTTCGGCAACGGGATGTCCATGGCACAGGGAGGAGTACCAGTTCATGTCAATTCATATATGGTTCCTCCAAGTGCTGGACCTAATACCCAGCCCAACAATTTTGGAACAACTCATAATGGTTCTGCAGCTCCCACGAGTTCTCATGTCACGCTTCAAACTACAAGACCGCCTGCTCAGCTTGCTAGTGGAAACTTCAATCCGCCACACGGTTCAGTAGCTTCTCAAGTATCTTACCAAGCCTCAAATTTTCCTGTTGTAAAATCCAACGTTGAGGTTATGGGTAGTTTTAATCCTCAGGCAGGAAACTACACAATGACTTCCCAGCAAATTCCTCCAGCCGGATCACTTTCAACTGCATCTCAAGCTTCGAAGAATAAGTTTGAAACCAAGTCCACAGTATGGTCTGACACATTAAGCAGAGGGCTAGTCAATTTAAACATATCTGGACCTAAAGCAAACCCAATGGCGGACATCGGTGTTGATTTTGAAGCCCTCAATAGGAAGGAGAAGAGGATGGAGAAGCCTAGTACAGCTCCAGTGATATCTACCATTAACATGGGTAAAGCTATGGGATCTGGTTCTGGGATAGGCCGAGCCGGTGCTAGTGCACTAAGGCCACCTCCAAATGCAATGTCAGGTTCCGGTTCCGGTTCGGGCATGGGAATGGGCATGGGCATGGGCATGGGCATGGGCATGAACCCCAATCTTGGCATGGGCATGGGCATGGGCATGAGAGGCTATGGAGGTATGAATCAACCCATGGGTGGCATGGGGATGAATATGGGCATGGGGCAACAAGGAATCCCAATGCAGCAACCTCGAGCGAACATGCCCGGTGTATACAACCCGATGATGGGTGCTGGTGGTTATGCTCCTCAACGGCCACCATACGGCAGTTACCAATGA 2799 46.05 MSFKQSPEPSSSDLSDRAFGFNPTYRSRFNQIYFTLLTADFCATISGLNARALARDRVESLILLGGMLFPSGATAMWLGWVGMKKAFDQTVRDLKREVNKTVLKIPKIEQKVLDATSNEPWGPHGSLLADIAQATRNYHEYQMIMGILWKRINDTGKNWRHVYKGLTVLEYLVGHGSERVIDDIREHAYQISTLSDFQYIDSNGRDQGNNVRKKSQNLVALVNDKERIIEVRQKAAANRDKFRSPSSMGSMYRPSSGGYDDRYEGRYGSRDGDRNVDSYGKERDYGFRDDRSGRNEDSYGRDYEERYNRDGFKDDDYRGRSRSIDDYQYGSRSRSSDRDGERTFDDDGQASSRNNGARADEQAQDGRQLERKFSEQNIGALPSYEEAVNESGSTGHSQRDVEAPATTAPRTFPPPTPSTPSQLTTHATTASPPTQGLDGSDEFDPRGSVPVPAAPNASSSLETNLFDSLALVPVGPVTSSADSESHVQTNSAVGSYTQTQTFEDPFGDSPFKAISSSGVQDQAHFHRGESFSAATYSTPDIPVQPQPNLHHPREETLQHHNIGVLADLLPPETLPAAVSQPTFTISNQPAQPNFQAASDLPAQPNSNLGNYQQDGNTGPVNFQNQTEPGREFGNGMSMAQGGVPVHVNSYMVPPSAGPNTQPNNFGTTHNGSAAPTSSHVTLQTTRPPAQLASGNFNPPHGSVASQVSYQASNFPVVKSNVEVMGSFNPQAGNYTMTSQQIPPAGSLSTASQASKNKFETKSTVWSDTLSRGLVNLNISGPKANPMADIGVDFEALNRKEKRMEKPSTAPVISTINMGKAMGSGSGIGRAGASALRPPPNAMSGSGSGSGMGMGMGMGMGMGMNPNLGMGMGMGMRGYGGMNQPMGGMGMNMGMGQQGIPMQQPRANMPGVYNPMMGAGGYAPQRPPYGSYQ 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31412875 31421623 - CaPI482276_07g016790.1 Cam07g1679 131972

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1679 932 ProSiteProfiles ENTH domain profile. 100 232 IPR013809 -
Cam07g1679 932 SMART enth_2 106 232 IPR013809 -
Cam07g1679 932 MobiDBLite consensus disorder prediction 584 631 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 500 520 - -
Cam07g1679 932 Pfam ENTH domain 107 228 IPR013809 -
Cam07g1679 932 PANTHER EPSIN/ENT-RELATED 83 859 - GO:0005543(PANTHER)|GO:0005768(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0030125(PANTHER)|GO:0030276(PANTHER)
Cam07g1679 932 MobiDBLite consensus disorder prediction 234 369 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 584 640 - -
Cam07g1679 932 FunFam Clathrin interactor 1 98 245 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 653 681 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 259 348 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 421 436 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 386 458 - -
Cam07g1679 932 MobiDBLite consensus disorder prediction 387 401 - -
Cam07g1679 932 CDD ENTH 108 224 - -
Cam07g1679 932 SUPERFAMILY ENTH/VHS domain 105 244 IPR008942 -
Cam07g1679 932 Gene3D - 105 244 IPR008942 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1679 K12471 - - csv:101208671 1350.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1679 Cam-Chr7:31412875 Cam08g0861 Cam-Chr8:12184848 9.50E-126 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1118 . . . . . . . . . . . Cma14g01498 . Car14g01330 . . Cpe03g01258 Bhi01g02630 . . . Hepe05g1275 . . . . . . . . . . . . . . . . Cme07g01854 . . . . . . . . . . Cmo14g01533 . . . . . . . . . . . . . Cla07g01582 Cam07g1679 Cec07g1774 Cco07g1737 Clacu07g1663 Cmu07g1629 Cre07g2003 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003028 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 2 2 1 1 12 1 2 53