Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1718 ATGTTCCAAGGGTTTGTTTTCGGCATTAATGACGTGTACGGCCACGAATTCTCCGCCATGTCTCTGCCGGAATTCACTAACAGCCAGTTAACGGAACAAATCGACGACACGGCGGTGTTCAGCTCCGACGAGTTTCGAATGTACTCGTACAAGATCCAACGGTGTCCAAGAAACCGCAGCCACGATTGGACGGAATGTCCGTACGCCCACCGCGGCGAGAAGGCGCAACGCCGTGACCCACGGCGGTTCAACTACACTGCCGTCGCCTGCCCGGCTTTCCGGTCGGGCAGCTGCCCCAAGGGAGATTTTTGTGAATTTGCTCATGGGGTTTTCGAGTACTGGCTTCACCCGGCCCGTTACCGGACCCGGGCTTGTAATGCTGGCCGGTTTTGCCAACGGAAAGTTTGTTTTTTTGCTCACTCGCCGGAGGAGCTCCGGCCAGATACCAAACAGAAATTTAATCTTAATGCTCACCGGCTGCGTGGGGCGGTCTCCACCGTTGAATGTCTGCCGGAGGAAAAAATTGACGGCGTTTCGGAAATTCCGGTGAGGGAGAACGGCGGCGGACGGGGAAATGAACGGAGTTTTGGGTTGGAGGTGTCGGAGTTGGACTCGCCGCATATTGACTGGATATCGGAATTGTTGCAGTAA 651 55.15 MFQGFVFGINDVYGHEFSAMSLPEFTNSQLTEQIDDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPDTKQKFNLNAHRLRGAVSTVECLPEEKIDGVSEIPVRENGGGRGNERSFGLEVSELDSPHIDWISELLQ 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 31919231 31919881 - CaPI482276_07g017180.1 Cam07g1718 132011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1718 216 ProSiteProfiles Zinc finger C3H1-type profile. 84 111 IPR000571 GO:0046872(InterPro)
Cam07g1718 216 PANTHER UNKEMPT FAMILY MEMBER 36 149 IPR045234 -
Cam07g1718 216 Gene3D - 81 154 - -
Cam07g1718 216 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 109 IPR000571 GO:0046872(InterPro)
Cam07g1718 216 SMART c3hfinal6 84 110 IPR000571 GO:0046872(InterPro)
Cam07g1718 216 SMART c3hfinal6 119 142 IPR000571 GO:0046872(InterPro)
Cam07g1718 216 SUPERFAMILY CCCH zinc finger 83 114 IPR036855 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1718 Cam-Chr7:31919231 Cam10g1676 Cam-Chr10:30768265 3.20E-45 dispersed
Cam07g1718 Cam-Chr7:31919231 Cam11g0200 Cam-Chr11:3522594 5.00E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52357 PF00642 zf-CCCH 1.20E-05 CL0537 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1718 - - - 0.0