Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam07g1742 ATGATGTTAGTTAGGATGGGAGAACTCTATCTTACAATTCTAATACTGGCTTGCCTTCATTATCTTGCACTGTCTGATTTTCAAGGTGATGCACTCTTTGCATTGAAGAATACATTGAATGCAACAGCAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGTCCAATGTTATATGTAGTGGAAGCAATGTGATCTCTGTATCCTTGTCCACAATGGGATTTACTGGAACCTTGTCTCCACGAATTGGACTTCTAAAATCACTTTCAACCCTGATTTTGCAGGGAAATTACATAACTGGAGAGATACCTAAGGATTTTGGAAACCTGACAAATTTGGTTAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCAAATACCATCGTCCCTTGGTAACCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCGTCTTACGGGGACTATTCCAGAGTCACTTTCAACCCTTCCTAGCTTGATCAATCTTCTGCTTGATTCAAATGATCTCAGTGGTCCAATTCCGCAGCAGTTATTTCAAGTTCCAAAATTCAACTTTTCTGCAAACAAGTTAAATTGTGGCGGGAAGTCTCTTCATGCCTGTGCTTCAGACAGTACAAACTCAGGTTCTTCAAATAAACCCAAGGTTGGCCTTATAGTTGGAATAATTGCTGGGTTTACCGTTGCTCTTCTTTTGGTGGGAGTATTATTTTTCTTGTCCAAGGGTAGATATAAAAGCTACAAGCGCGAAGTGTTTGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTGCATGGAGGGAACTACAGCTAGCCACAGACAACTTTAGCGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGCTTGCAGATGGCACCAAAGTTGCTGTGAAACGGTTGACTGATTATGAAAGTCCGGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTGTTGCGTCTCATTGGGTTCTGTACAACTCAGACGGAACGCCTATTGGTGTATCCCTTTATGCAGAACTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCAGGAGAGGCTGTTCTAGATTGGCCTACTCGGAAACGGGTGGCATTGGGCACAGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAACCCAAAGATTATTCATCGAGATGTCAAGGCAGCTAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTCGGCGATTTTGGCTTAGCAAAGTTGGTTGATGTTAGAAAGACCAATGTCACTACTCAAGTTCGAGGGACAATGGGTCACATAGCACCGGAGTACTTATCTACTGGAAAATCATCCGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTAACGGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGACGATGTTTTACTGCTCGACCATGTTAAGAAACTAGAAAGGGAGAAACGACTTGATGCCATTGTTGATCGAAATCTAAAAAACTACAACATTCAAGAGGTGGAGATGATGATTCAAGTCGCATTGCTGTGTACACAGCCATGCTCGGATGACCGCCCAGCAATGTCACAAGTCGTTCGGATGCTCGAGGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTGACTCGCAGACAAGAATATGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATACATAGACAGGATGCAATCCAGTTGTCTGGTGGAAGATGA 1833 42.66 MMLVRMGELYLTILILACLHYLALSDFQGDALFALKNTLNATANQLTDWNPNQVNPCTWSNVICSGSNVISVSLSTMGFTGTLSPRIGLLKSLSTLILQGNYITGEIPKDFGNLTNLVSLDLGNNSLTGQIPSSLGNLKKLQFLTLSQNRLTGTIPESLSTLPSLINLLLDSNDLSGPIPQQLFQVPKFNFSANKLNCGGKSLHACASDSTNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLSKGRYKSYKREVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLDAIVDRNLKNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIQLSGGR 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 32128257 32134927 + CaPI482276_07g017420.1 Cam07g1742 132035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam07g1742 610 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Cam07g1742 610 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 608 - -
Cam07g1742 610 ProSitePatterns Protein kinases ATP-binding region signature. 294 316 IPR017441 GO:0005524(InterPro)
Cam07g1742 610 SMART serkin_6 288 561 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam07g1742 610 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515(InterPro)
Cam07g1742 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam07g1742 610 Gene3D Transferase(Phosphotransferase) domain 1 365 581 - -
Cam07g1742 610 ProSiteProfiles Protein kinase domain profile. 288 566 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam07g1742 610 FunFam Somatic embryogenesis receptor kinase 1 257 364 - -
Cam07g1742 610 FunFam Putative LRR receptor-like serine/threonine-protein kinase 25 208 - -
Cam07g1742 610 Gene3D Phosphorylase Kinase; domain 1 257 364 - -
Cam07g1742 610 SUPERFAMILY Protein kinase-like (PK-like) 268 562 IPR011009 -
Cam07g1742 610 Gene3D Ribonuclease Inhibitor 26 207 IPR032675 -
Cam07g1742 610 Pfam Protein tyrosine and serine/threonine kinase 291 561 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cam07g1742 610 FunFam Somatic embryogenesis receptor-like kinase 1 365 581 - -
Cam07g1742 610 SUPERFAMILY L domain-like 28 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1742 Cam-Chr7:32128257 Cam08g2255 Cam-Chr8:27668121 1.30E-123 dispersed
Cam07g1742 Cam-Chr7:32128257 Cam07g1743 Cam-Chr7:32138635 3.40E-233 tandem
Cam02g0010 Cam-Chr2:1272043 Cam07g1742 Cam-Chr7:32128257 1.00E-166 transposed
Cam06g1409 Cam-Chr6:25518393 Cam07g1742 Cam-Chr7:32128257 1.90E-109 transposed
Cam07g0957 Cam-Chr7:23473873 Cam07g1742 Cam-Chr7:32128257 3.80E-139 transposed
Cam08g0748 Cam-Chr8:7364670 Cam07g1742 Cam-Chr7:32128257 5.00E-139 transposed
Cam09g1685 Cam-Chr9:29364832 Cam07g1742 Cam-Chr7:32128257 1.40E-119 transposed
Cam10g0891 Cam-Chr10:20022795 Cam07g1742 Cam-Chr7:32128257 1.10E-127 transposed
Cam01g0525 Cam-Chr1:5553081 Cam07g1742 Cam-Chr7:32128257 4.40E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85346 PF00069 Pkinase 1.80E-42 CL0016 Cam PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam07g1742 - - - 0.0