Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0007 ATGTCTCGAAGATCGACCAGGTTAGTGGAAAAGGCGAATGAATATTTAGAGAAACCCACAAATAGTGAAACTGCAAAATCATCCAGAACTAAGAGATATGGTGTATCTAAGGGAAACCTTAAATCTTCTAGGAGTCAGAAGTGGACACGAAATAATGAGATTAAGGTAAATGAAGTTACGTGTCCTCCATCTTTTGAGCAATTAGAGGGAAAGAAGAGAAAGACATCTAGTAAGAGGTCAATCACAAGAGCAACTACTTCAAAGAAGTTTAGGTCCGAGGAGGGGATCAACAAAAAAGGGAGTGGGAGATTAAGGAAGAGGGTGTATTATCAAAAAGTGGTTTTTGATGGTGGTGAATTTGAGGTTGGGGATGATGTTTATGTGAGGAGGAGAGAAGATGCAAGCTCTGACGATGAAGACCCTGAAGTTGAGGAGTGTAGAGTGTGCTTTAAGTCTGGAAAGGCTATAATGATCGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGAAGTGTTTGAAGCCGCCATTGAAGGTAATCCCTGAGGGGGATTGGATTTGTGGGTTTTGTGAGGCTGCTAAAATGGGCAAAGAGGTTCAGTTTCCAAAGCCTCTAGAGGGTAAAAAACGGGTTAGGACAATGAGAGAGAAGCTTCTAGCAGGCGAATTGTGGGCTGCTCACATTGAAAGTTTATGGAAACAAGTGAATGGTAACCATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACCGCAGCTGGAAGGCAACCACATAACTTGAAGAGAGAGCTTTATTTAACTAATGATTATGCAGATATTGAGATGGAATCACTTCTTAGACTGTGTGAAGTCATGAATCCTAAAGACTATTATAATGCCAAGGAAGGGGATGATATATTTTTATGTGAGTATGAATATGACGTTCGTTGGCATAGTTTCAAGAGATTAGCTGAAATTGATAAAGAAGAGGGTAGCGAAGCAGTTGATAGTGACAAAGAGTGGAAGTTGGACCAGAATGCAGACTCTGATTCAGACGGTGATGTGGAATATGAAGAAGAGAGAGCACACATTTTACAATCTCGAAACTACTCAAGATCAACCCATGAATTGGCCGCAAATTCAAGGAAAGGACGATTTTGTGGACTACAAAAGATAGGAGCTAAGAAGATCCCAGAGCATATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCCCTACCCAAGTCTCTACCGTGTAGAAATAAAGAAATTGAGGAGATAACTACATTTATAGAAAGTGCTTTATGTGATGATCAATGCTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGAAATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCAGCGCCAGAAAATATATACAGGGTTATACATGAAGCATTAACCGGGTATAGGGTTAATTGGAAAAAGGCGCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAATAATTGCAGGGATGATGAGCGACCTTGCATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAACCAGTCAGTTCTATACAACATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAATACCATGGACCTACCTGAGAAGTTGCTTCCTCGAATTTCAAGCCGAATGGGTATTGAAAGGCTTTGTTTCGGCCCTTATAACTATCAGCAACTTCAAGAAATCATTTCGAGCCGTCTTGAAGGAATCAATGCGTTTGAGAAACAAGCTATTGAATTTGCATCGAGAAAGGTAGCTGCTATTTCAGGAGATGCACGCCGTGCTCTGGAGATATGTAGGCGTGCAGCTGAAATTACGGATTATCATTTAAAGAAGCAGCTGAGTTTGACTTCCAACACTGTTATGAATGGTTGTTTCCCCATTGCTTCCTTGCAATTACATGGCAAGGCACAATTTCTTTTGTTCGATGTGTTTAGGGCAGTATTAGGTTTTGGCTATTATGTCCGAAATTTTGGTTCTTTCCATCATCTTTGCTCCATTCCTAGTCCAGTAGGAAAGTTTGCAGGTTGTATAGCTGGTTCTGAAACTGAATTACAAACGAAAACACATGTAGGAATAACTGAGGTGGAAGCAGCGATTCAAGAAATGTTTCAAGCACCTCATATTCAAATGTGGAAACAAAGTGTAGAGTCCCACCATGCAAAACGAGTCCCTTAA 2313 40.94 MSRRSTRLVEKANEYLEKPTNSETAKSSRTKRYGVSKGNLKSSRSQKWTRNNEIKVNEVTCPPSFEQLEGKKRKTSSKRSITRATTSKKFRSEEGINKKGSGRLRKRVYYQKVVFDGGEFEVGDDVYVRRREDASSDDEDPEVEECRVCFKSGKAIMIECDDCLGGFHLKCLKPPLKVIPEGDWICGFCEAAKMGKEVQFPKPLEGKKRVRTMREKLLAGELWAAHIESLWKQVNGNHQCKVRWYIIPEETAAGRQPHNLKRELYLTNDYADIEMESLLRLCEVMNPKDYYNAKEGDDIFLCEYEYDVRWHSFKRLAEIDKEEGSEAVDSDKEWKLDQNADSDSDGDVEYEEERAHILQSRNYSRSTHELAANSRKGRFCGLQKIGAKKIPEHIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESALCDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGNIRPHCFVEVNGLKLAAPENIYRVIHEALTGYRVNWKKALQLLTKRFSDVNNCRDDERPCILLIDELDLLVTRNQSVLYNILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIERLCFGPYNYQQLQEIISSRLEGINAFEKQAIEFASRKVAAISGDARRALEICRRAAEITDYHLKKQLSLTSNTVMNGCFPIASLQLHGKAQFLLFDVFRAVLGFGYYVRNFGSFHHLCSIPSPVGKFAGCIAGSETELQTKTHVGITEVEAAIQEMFQAPHIQMWKQSVESHHAKRVP 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 120566 134326 + CaPI482276_08g000070.1 Cam08g0007 132058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0007 770 Pfam AAA lid domain 619 655 IPR041083 -
Cam08g0007 770 SUPERFAMILY FYVE/PHD zinc finger 132 196 IPR011011 -
Cam08g0007 770 MobiDBLite consensus disorder prediction 327 342 - -
Cam08g0007 770 Gene3D - 214 402 IPR043151 -
Cam08g0007 770 FunFam Origin recognition complex subunit 1 399 597 - -
Cam08g0007 770 ProSitePatterns Zinc finger PHD-type signature. 146 189 IPR019786 -
Cam08g0007 770 Gene3D - 593 669 - -
Cam08g0007 770 SMART PHD_3 145 190 IPR001965 -
Cam08g0007 770 Pfam ATPase family associated with various cellular activities (AAA) 447 591 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam08g0007 770 FunFam Origin recognition complex subunit 1 594 676 - -
Cam08g0007 770 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Cam08g0007 770 FunFam Origin recognition complex subunit 1 141 208 - -
Cam08g0007 770 SMART BAH_4 177 317 IPR001025 GO:0003682(InterPro)
Cam08g0007 770 Pfam BAH domain 225 315 IPR001025 GO:0003682(InterPro)
Cam08g0007 770 MobiDBLite consensus disorder prediction 18 51 - -
Cam08g0007 770 ProSiteProfiles Zinc finger PHD-type profile. 143 192 IPR019787 -
Cam08g0007 770 Gene3D - 403 592 IPR027417 -
Cam08g0007 770 Pfam PHD-finger 146 189 IPR019787 -
Cam08g0007 770 MobiDBLite consensus disorder prediction 1 51 - -
Cam08g0007 770 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 195 759 IPR050311 GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER)
Cam08g0007 770 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 654 IPR027417 -
Cam08g0007 770 MobiDBLite consensus disorder prediction 1 17 - -
Cam08g0007 770 ProSiteProfiles BAH domain profile. 202 317 IPR001025 GO:0003682(InterPro)
Cam08g0007 770 MobiDBLite consensus disorder prediction 327 348 - -
Cam08g0007 770 MobiDBLite consensus disorder prediction 68 94 - -
Cam08g0007 770 SMART AAA_5 442 595 IPR003593 GO:0016887(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52361 PF00004 AAA 2.90E-19 CL0023 Cam TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0007 K02603 - csv:101214082 1191.79