Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0021 ATGCAGTCCACAACTGGTGCTGGTGCTACTGGTAGTCGTAGCTCCGGCGGCGGTACCGGCGGTGGCCTCGCTCGCTTCCGCTCTGCCCCTGCCGCCTGGTTGGAAGCGCTTTTGGAGGACGACGAGGAGGACCCTCTCAAGCCCAATCACTGCTTGACTCAGCTTCTCGCCGCCGACTCCTCCGACCTCGACTCTCCCGCTGATCAGCCCTTGTTCGACCCCAATCCCTCCCCGGCCTTCCACAGACAGAATAGCTCTCCCGCCGAGTTTCTCGCCGCCTCTGGAATTGGGGAAGGATTTTACACTGCCTATGCTCTCAATTCCTCCCCCACTCTTGACATCTCTCCCACCTCCAAGCGAGCTAGAGAAGTCGACCCCCAAAACTTCTCCCCCAAATTTTCACCTCAACTGAAAAGGGAAGGAAGTGGAGTTTCCAGTTTAATAGACATGGAAATGGAGAAGTTATTGGAGGACTCTGTGCCCTGCCGGGTAAGGGCCAAGCGTGGCTGTGCGACGCATCCTCGGAGCATTGCGGAGAGGGTTCGTAGGACTAGAATTAGTGACAGAATAAGGAAGCTTCAGGAGGTTGTCCCCAACATGGATAAGCAAACAAACACTGCAGATATGTTAGAAGAAGCAGTAGAGTATGTCAAATTCCTTCAAAAGCAAATTCAGGAACTCACGGAGCATCAGCGCAGGTGCAAATGCATGGTAGTAAAAGTTATAGTAAGTGAAAGGAAGTGCCATAGAGTGGAAGAAACCCGACAACGCTTTGTTGAAATAACGCAGTACAAGAAACCAAGGTAA 807 52.54 MQSTTGAGATGSRSSGGGTGGGLARFRSAPAAWLEALLEDDEEDPLKPNHCLTQLLAADSSDLDSPADQPLFDPNPSPAFHRQNSSPAEFLAASGIGEGFYTAYALNSSPTLDISPTSKRAREVDPQNFSPKFSPQLKREGSGVSSLIDMEMEKLLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEVVPNMDKQTNTADMLEEAVEYVKFLQKQIQELTEHQRRCKCMVVKVIVSERKCHRVEETRQRFVEITQYKKPR 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 559312 565373 + CaPI482276_08g000210.1 Cam08g0021 132072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0021 268 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 47 237 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cam08g0021 268 MobiDBLite consensus disorder prediction 116 141 - -
Cam08g0021 268 Pfam Helix-loop-helix DNA-binding domain 176 221 IPR011598 GO:0046983(InterPro)
Cam08g0021 268 FunFam Transcription factor bHLH130 family 171 240 - -
Cam08g0021 268 MobiDBLite consensus disorder prediction 1 17 - -
Cam08g0021 268 CDD bHLH_AtbHLH_like 175 227 IPR045239 -
Cam08g0021 268 Gene3D - 171 242 IPR036638 GO:0046983(InterPro)
Cam08g0021 268 SMART finulus 176 226 IPR011598 GO:0046983(InterPro)
Cam08g0021 268 Coils Coil 210 230 - -
Cam08g0021 268 MobiDBLite consensus disorder prediction 1 25 - -
Cam08g0021 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 238 IPR036638 GO:0046983(InterPro)
Cam08g0021 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0021 Cam-Chr8:559312 Cam10g1695 Cam-Chr10:30970166 4.00E-29 dispersed
Cam08g0021 Cam-Chr8:559312 Cam02g1763 Cam-Chr2:30763674 9.00E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52362 PF00010 HLH 3.50E-10 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0021 - - - 0.0