Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0041 ATGGGGAGAGGAAAGATTGAAATAAAGAGAATAGAAAACACAACAAATCGACAAGTGACATTCTGCAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCCCTCATTGTCTTCTCCAGCCGTGGCCGTCTCTATGAATACTCCAATAACAGTATCAAAACTACTATTGAGAGGTACAAGAAGGCTTGTTCTGATAGCTCAGCTACCAGCTCTGTCACTGAACTAAATACTCAATATTATCAGCAAGAATCGGCTAAGCTGCGTCAACAAATACAAATGCTTCAGAATTCCAACAGGCACTTGATGGGGGACTCCTTGAGTGCTCTTACAGTCAAAGAACTAAAGCAGCTTGAAAATAGGCTTGAAAGGGGCATCACTAGAATCAGATCAAAGAAGCATGAAATGTTGCTAGCAGAAATTGAGTATCTTCAAAAAAGGGAGATTGAGCTGGAGAATGAAAATGTGTGTATTAGAACCAAGATAGCTGAAGTTGAGAGGCTCCAACAAGCAAACATGGTATCTGGACAAGAACTGAATGCAATTCAGGCATTGGCTTCTCGCAATTTCTTCTCTCCTAATATGATGGAAGGTGGAGCTGTTACTTACTCTCATCAAGACAAGAAGATGCTTCATCTTGGGTGA 672 40.48 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSIKTTIERYKKACSDSSATSSVTELNTQYYQQESAKLRQQIQMLQNSNRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVCIRTKIAEVERLQQANMVSGQELNAIQALASRNFFSPNMMEGGAVTYSHQDKKMLHLG 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 947872 956093 - CaPI482276_08g000410.1 Cam08g0041 132092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0041 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g0041 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Cam08g0041 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 Coils Coil 124 163 - -
Cam08g0041 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cam08g0041 223 Pfam K-box region 86 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cam08g0041 223 Gene3D - 14 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cam08g0041 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g2468 Cam-Chr1:36419336 Cam08g0041 Cam-Chr8:947872 1.40E-71 dispersed
Cam02g1899 Cam-Chr2:32038619 Cam08g0041 Cam-Chr8:947872 1.20E-66 dispersed
Cam03g0710 Cam-Chr3:7970071 Cam08g0041 Cam-Chr8:947872 4.60E-72 dispersed
Cam06g0205 Cam-Chr6:3860435 Cam08g0041 Cam-Chr8:947872 7.10E-35 dispersed
Cam08g0041 Cam-Chr8:947872 Cam08g1503 Cam-Chr8:21251092 1.50E-37 dispersed
Cam08g0041 Cam-Chr8:947872 Cam08g0049 Cam-Chr8:1032840 1.00E-25 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52364 PF01486 K-box 8.60E-27 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0041 K09264 - csv:101208072 415.616