Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0077 ATGGCGTTGAATATGAAAACCCTCACCCAAGCCCTGGCCAAGACCGCCGCGGTGATCGAGAAAACCGTTCATACCACTGTCCAGGAGGTCACCGGACCCAAGCCCCTTCAGGATTACGAGCTTCTTGATCAGATCGGCTCCGCTGGTCCCGGCATGGTTTGGAAATTGTATTCTGCGAAGGCTCGTGATTCTTCGCGGCCTCAGCAATATCCCACTGTTTGCGTATGGGTTTTGGATAAGAGGGTTCTGTCGGAGGCCAGGGCTCGCGCGGGGCTGTCGAAGTCTGTCGAGGATTCGTTTTTGGATCTGATTCGAGCCGATGCGGGGCGGTTGGTGAGGCTGAGGCATCCGGGAGTGGTTCATGTGGTGCAGGCGTTGGATGAGAACAAGAATGCCATGGCCATGGTTACTGAGCCGCTTTTTGCGTCCGTGGCAAATGTTGTTGGGAATGTGGACAATGTTGCTAAGGTTCCTAAGGAGCTCATTGGTTTGGAAATGGGATTACTGGAAATAAAGCATGGTTTGCTTCAGATAGCAGAGTCTTTAAACTTTCTTCATAGCAATGCACATCTCATTCATCGGGCTATATCTCCGGAGAATGTCCTCATCACTTCAAATGGAGCTTGGAAACTTGCTGGATTTGGCTTTGCAATTCCAGCAGATCAGACTTCGAGTGACATGGCTACCATGCAGGCTTTCCACTATGCCGAATACGATGTGGAAGATTCTGTGCTGCCTCTTCAGCCATCTCTGAATTACACTGCTCCTGAATTGGTTAGGAGTAAATCATCTTTGGCTAGTTGTTCCTCAGATATTTTCAGCTTTGGATGCCTTGCTTACCATTTGGTTGCTAGAAAGCCTTTGTTTGACTGCCACAACAATGTTAAAATGTACATGAATTCCTTAACTTACCTGTCAACTGAGTCGTTTGCTTCAATTCCTCCGGAGTTAGTTCCTGACTTGCAGAGAATGCTATCATCAAATGAGTCTTTCCGGCCAACAGCATTGGAATTCACGGGTTCCCCATTTTTTCGAGATGACACTAGGCTGCGTGCTCTTCGCTTTCTCGACCACATGCTTGAAAGGGATAACATGCAAAAGTCTGACTTCTTGAAAGCTCTATCTGATATGTGGAAAGATTTTGATTCCCGTATATTGCGCTATAAGGTCCTTCCACCTCTTTGTGCAGAATTACGGAATCTGGTTATGCAGCCTATGATACTTCCCATGGTACTCACAATAGCAGAGTCGCAGGATAAACATGATTTTGAGCTATCAACTTTGCCATCTCTTGTTCCCGTCCTGAGTACTGCTGCAGGTGACACATTGTTGCTGCTTGTGAAGCATGCTGATCTTATAATTAACAAGACCAATCAAGAACAATTAATAACAAATGTCCTGCCGTTGATTGTTCGTGCTTATGATGATAATGATGCTCGCATACAAGAGGAAGTTCTGAGGAAATCAGTTTCCCTTGCTAAGCAACTTGACACACAGTTAGTGAAACAAGCAATTTTGCCTCGTGTTCATGGTTTAGCTCTAAAGACAACAGTTGCTGCGGTTAGAGTCAATGCTTTGCTGTGCTTTGGAGAATTGGTTCAGACGCTTGATAAACATGCAGTTCTAGAAATCTTGCAAACAATTCAACGTTGTACAGCTGTGGACCGATCTGCTCCCACGCTCATGTGTACCCTTGGGGTTGCAAACTCAATCCTTAAGCAGTATGGAATCGAATTTATTGCGGAGCACGTTCTTCCTTTACTCGTACCTCTTCTTACAGCGCAACAATTAAATGTTCAGCAGTTTGCTAAATATATGCTTTTTGTCAAGGACATTCTCAGGAAAATAGAAGAGAAAAGAGGAGTCACTGTTTCTGATTCTGGAATACCGGAGATGAAATCAACTCTGGTTTCTAATGGCCCACTGTCCCAATCATCAAGCAGAGCAGGTGATACCGTCGTTCCAACAATAAAAAGTCGACCTGCTTGGGATGAAGATTGGGGGCCTACTTCTAAGGGACATACACCCCCACAAAATTCTTCTAGCAATATCTCGTCTGCTCCTGTTCTTGGTGGTCAATCCATAACAGGAAATTCTATACAAACAAATTCTGTTGCGACAACATCTCTGTCTAGTAATCAAACTGTTGCATCCTGCCTTCCAGTTAATATTGAGTGGCCTCCTCGGAACTCTACTGGCGGTGCACCTAGAATAGCTGATTCTGGGATGCAAGCAACTATAGGAGCATCATCCACTTCAAACTCAGATGATGTGGACCCTTTTGCTGACTGGCCTCCACGCCCTAGTGGCTCACTTGGAGGTGGTTCCGGAGTTTCCAACAATGGGGCGGTTGGGCCATCCATGAACAAATATGGAACTAGTTCATCCATGAGTACACCAAACAGTTTGAACTCTCAAACAAACAGCAATGCCAGTTGGACCATCAACAACAAAAATACCAGTGAACCGATGAGACAAAGTCATGGAATTTTGACTTTCAACTCAAGCAGTTTGGGGACTGGGGGCCTCAATTCCCAAAGTTCTATTGGATTCCAGAAGCAAAACCAGGGAATATCATCCCAACATGCATATGATGCCCACAAAAAGTTCACTGATCTTGGATCCATATTTGCACCTAGTAAGAATGAGAATAATATTGCTCCTAGACTTGCACCACCTCCCTCAACTGCTGTCGGTAGAGGAAGAGGAAGAGGGAGAGGGGTTTCATCAACATCTCGTTCTACTCAAAACAAATCATCATCCGGACAACCTCCCTTAATGGACTTGCTGTAG 2793 45.36 MALNMKTLTQALAKTAAVIEKTVHTTVQEVTGPKPLQDYELLDQIGSAGPGMVWKLYSAKARDSSRPQQYPTVCVWVLDKRVLSEARARAGLSKSVEDSFLDLIRADAGRLVRLRHPGVVHVVQALDENKNAMAMVTEPLFASVANVVGNVDNVAKVPKELIGLEMGLLEIKHGLLQIAESLNFLHSNAHLIHRAISPENVLITSNGAWKLAGFGFAIPADQTSSDMATMQAFHYAEYDVEDSVLPLQPSLNYTAPELVRSKSSLASCSSDIFSFGCLAYHLVARKPLFDCHNNVKMYMNSLTYLSTESFASIPPELVPDLQRMLSSNESFRPTALEFTGSPFFRDDTRLRALRFLDHMLERDNMQKSDFLKALSDMWKDFDSRILRYKVLPPLCAELRNLVMQPMILPMVLTIAESQDKHDFELSTLPSLVPVLSTAAGDTLLLLVKHADLIINKTNQEQLITNVLPLIVRAYDDNDARIQEEVLRKSVSLAKQLDTQLVKQAILPRVHGLALKTTVAAVRVNALLCFGELVQTLDKHAVLEILQTIQRCTAVDRSAPTLMCTLGVANSILKQYGIEFIAEHVLPLLVPLLTAQQLNVQQFAKYMLFVKDILRKIEEKRGVTVSDSGIPEMKSTLVSNGPLSQSSSRAGDTVVPTIKSRPAWDEDWGPTSKGHTPPQNSSSNISSAPVLGGQSITGNSIQTNSVATTSLSSNQTVASCLPVNIEWPPRNSTGGAPRIADSGMQATIGASSTSNSDDVDPFADWPPRPSGSLGGGSGVSNNGAVGPSMNKYGTSSSMSTPNSLNSQTNSNASWTINNKNTSEPMRQSHGILTFNSSSLGTGGLNSQSSIGFQKQNQGISSQHAYDAHKKFTDLGSIFAPSKNENNIAPRLAPPPSTAVGRGRGRGRGVSSTSRSTQNKSSSGQPPLMDLL 930
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 1380931 1414406 + CaPI482276_08g000770.1 Cam08g0077 132128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0077 930 MobiDBLite consensus disorder prediction 881 930 - -
Cam08g0077 930 SUPERFAMILY Protein kinase-like (PK-like) 34 348 IPR011009 -
Cam08g0077 930 Pfam Protein kinase domain 108 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g0077 930 MobiDBLite consensus disorder prediction 747 825 - -
Cam08g0077 930 MobiDBLite consensus disorder prediction 773 825 - -
Cam08g0077 930 SUPERFAMILY ARM repeat 346 605 IPR016024 -
Cam08g0077 930 CDD PK_SCY1_like 45 346 - -
Cam08g0077 930 MobiDBLite consensus disorder prediction 633 653 - -
Cam08g0077 930 Gene3D Phosphorylase Kinase; domain 1 36 138 - -
Cam08g0077 930 MobiDBLite consensus disorder prediction 633 695 - -
Cam08g0077 930 MobiDBLite consensus disorder prediction 907 924 - -
Cam08g0077 930 Gene3D Transferase(Phosphotransferase) domain 1 160 347 - -
Cam08g0077 930 ProSiteProfiles Protein kinase domain profile. 39 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g0077 930 MobiDBLite consensus disorder prediction 672 695 - -
Cam08g0077 930 Gene3D - 348 621 IPR011989 -
Cam08g0077 930 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 13 922 IPR051177 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0077 K17541 - - csv:101223115 1623.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1355 . . Bda01g00863 . . . . . . . Cma01g00928 . . . . Cpe06g00967 . Bhi04g02176 . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 . . . . . . . Cme03g00918 Blo17g00141 Blo18g00151 . Bda13g01425 Bpe02g01100 . Bma01g01436 Bma02g00160 . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00243 . Chy03g00268 .
Vvi18g1693 Blo01g01678 . . . Bpe02g00263 . . Bma01g02446 . . Cma01g00863 Cma09g01302 Car01g00792 . . Cpe06g00982 . . . . . . . . Cla08g00080 Cam08g0077 Cec08g0174 Cco08g0134 Clacu08g0090 Cmu08g0089 Cre08g0078 Cone4ag1158 . . . . . . Cme09g00077 . . Bda11g00925 . . . . . . Cmo01g00908 . . . . Car09g01114 . Cpe02g00993 . . . . . . . . . . . . . . Lsi08g00097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006310 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 3 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85349 PF00069 Pkinase 1.10E-23 CL0016 Cam PK