Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0117 ATGTCAGGAAGATCGAATGGCTGCACCGTTTACGTAGGTAATTTGGATGAAAGAGTAAGTGATAGGGTTCTTTATGACATTCTAATCCAAGCTGGGCGGGTAGTGGACTTGCACATTCCTCGGGACAAGGAATCCGGCAAGCCAAAGGGTTTTGCTTTTGCAGTATATGAAAATGAGGAGATTACCAACTATGCTGTTAAGCTTTTCTCTAATCTTGTGACTCTTCATAACCGTACCCTGAAGTTTGCAGTGTCTGGGCAAGACAAGTCTTCACCTAGTAGTAGTGCAATCACTTCATCATCAAATGTATCTCATAAATCGAGGTCGTATATTGTTCCAGGTTACTCTAATGAAATATCTCAGCATTCCAATCACTTGTCAACGTCGTGCAGGTTTTCAACGTACCCCGAAAACCATGTGGAAGATAAAACATTTGGTGATCAGGCTAGTGGCAGTTCTATCAGAGGATCATTATAA 477 41.72 MSGRSNGCTVYVGNLDERVSDRVLYDILIQAGRVVDLHIPRDKESGKPKGFAFAVYENEEITNYAVKLFSNLVTLHNRTLKFAVSGQDKSSPSSSAITSSSNVSHKSRSYIVPGYSNEISQHSNHLSTSCRFSTYPENHVEDKTFGDQASGSSIRGSL 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 2090578 2098339 + CaPI482276_08g001170.1 Cam08g0117 132168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0117 158 Pfam RNA recognition motif 10 80 IPR000504 GO:0003723(InterPro)
Cam08g0117 158 Gene3D - 2 96 IPR012677 -
Cam08g0117 158 SUPERFAMILY RNA-binding domain, RBD 5 84 IPR035979 GO:0003676(InterPro)
Cam08g0117 158 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 145 IPR052285 -
Cam08g0117 158 MobiDBLite consensus disorder prediction 84 104 - -
Cam08g0117 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 87 IPR000504 GO:0003723(InterPro)
Cam08g0117 158 SMART rrm1_1 9 83 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0117 K12831 - - csv:101222164 205.297
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0084 Cam-Chr8:1514321 Cam08g0117 Cam-Chr8:2090578 2.00E-61 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1709 Blo01g01680 Blo12g00814 . Bda03g00358 Bpe02g00261 . Bma04g00335 Bma01g02447 . . Cma01g00868 Cma09g01300 . . . Cpe06g00980 . . . . . . . . Cla08g00119 Cam08g0117 Cec08g0139 Cco08g0177 Clacu08g0128 Cmu08g0122 Cre08g0108 Cone4ag1156 . . . . . . Cme09g00085 . . . . . . . . . Cmo01g00911 . . . . Car09g01111 . Cpe02g00991 . . . . . . . . . . . . . . Lsi08g00104 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002883 1 6 2 2 1 2 1 1 2 2 2 1 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 3 3 1 53