Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g0171 | ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATCCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAGCCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACCACAATGCGAAGAAGCACCTCCTCCACCTAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA | 594 | 42.59 | MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEPQCEEAPPPPSTQACQHTTPPV | 197 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3457728 | 3459265 | + | CaPI482276_08g001710.1 | Cam08g0171 | 132222 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g0171 | 197 | PANTHER | RING-H2 FINGER PROTEIN ATL16 | 21 | 173 | IPR044600 | GO:0016567(InterPro)|GO:0016740(InterPro) | |
Cam08g0171 | 197 | SMART | ring_2 | 109 | 150 | IPR001841 | - | |
Cam08g0171 | 197 | MobiDBLite | consensus disorder prediction | 178 | 197 | - | - | |
Cam08g0171 | 197 | CDD | RING-H2_EL5-like | 109 | 151 | - | - | |
Cam08g0171 | 197 | MobiDBLite | consensus disorder prediction | 166 | 197 | - | - | |
Cam08g0171 | 197 | Pfam | Ring finger domain | 108 | 151 | IPR001841 | - | |
Cam08g0171 | 197 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 156 | IPR013083 | - | |
Cam08g0171 | 197 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 151 | IPR001841 | - | |
Cam08g0171 | 197 | SUPERFAMILY | RING/U-box | 93 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam01g0179 | Cam-Chr1:2132758 | Cam08g0171 | Cam-Chr8:3457728 | 1.60E-20 | dispersed | |
Cam04g0543 | Cam-Chr4:18813365 | Cam08g0171 | Cam-Chr8:3457728 | 1.10E-08 | dispersed | |
Cam08g0171 | Cam-Chr8:3457728 | Cam08g1260 | Cam-Chr8:18927758 | 1.60E-14 | dispersed | |
Cam08g0171 | Cam-Chr8:3457728 | Cam09g0365 | Cam-Chr9:3975394 | 3.40E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g0171 | K19039 | - | csv:101219324 | 351.673 |