Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0171 ATGGCTTATGACCATTTGGATCCATCTAAAAGCTATTCAGTTGCTTCAGGACCAGGTCCAATCTCAAGGCCTGCACCAGAACTGAAGCTCTATCAGTTTTTTGTTTTCTGTATCCCAATTCTTTTCACTTTCATTCTTCTATTCCTTTTCTACCTCCTTTATCTTCGTCGACGAAGGGCTGATTGGACTTCCATTCGAATGCGAACATCTGCTGCAGCCAATAACAATAACATCTCTACATCTGAAGTTGGGTTGAAGAAAGAATTCAGGGAGATGCTTCCTATTATTGTATACAATGAGACATTCTTTGTCACTGATACACTTTGTTCGGTTTGTTTAGGAGAATACAAAACAGAAGATAAACTTCAGAAGATACCATCATGTGGGCATGTATTTCACCTTGACTGCATTGATCATTGGCTATCCAACCACAACACTTGTCCACTCTGCCGTCTCTCTGTCCTCTCACCGTCGTCTCAGCCACCACATATTCAGATCGACATGGGACTCGAATCGTCGAACGAACCACAATGCGAAGAAGCACCTCCTCCACCTAGTACTCAAGCTTGTCAACATACAACACCTCCAGTGTAA 594 42.59 MAYDHLDPSKSYSVASGPGPISRPAPELKLYQFFVFCIPILFTFILLFLFYLLYLRRRRADWTSIRMRTSAAANNNNISTSEVGLKKEFREMLPIIVYNETFFVTDTLCSVCLGEYKTEDKLQKIPSCGHVFHLDCIDHWLSNHNTCPLCRLSVLSPSSQPPHIQIDMGLESSNEPQCEEAPPPPSTQACQHTTPPV 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3457728 3459265 + CaPI482276_08g001710.1 Cam08g0171 132222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0171 197 PANTHER RING-H2 FINGER PROTEIN ATL16 21 173 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
Cam08g0171 197 SMART ring_2 109 150 IPR001841 -
Cam08g0171 197 MobiDBLite consensus disorder prediction 178 197 - -
Cam08g0171 197 CDD RING-H2_EL5-like 109 151 - -
Cam08g0171 197 MobiDBLite consensus disorder prediction 166 197 - -
Cam08g0171 197 Pfam Ring finger domain 108 151 IPR001841 -
Cam08g0171 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 156 IPR013083 -
Cam08g0171 197 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Cam08g0171 197 SUPERFAMILY RING/U-box 93 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0179 Cam-Chr1:2132758 Cam08g0171 Cam-Chr8:3457728 1.60E-20 dispersed
Cam04g0543 Cam-Chr4:18813365 Cam08g0171 Cam-Chr8:3457728 1.10E-08 dispersed
Cam08g0171 Cam-Chr8:3457728 Cam08g1260 Cam-Chr8:18927758 1.60E-14 dispersed
Cam08g0171 Cam-Chr8:3457728 Cam09g0365 Cam-Chr9:3975394 3.40E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0171 K19039 - csv:101219324 351.673