Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0173 ATGCTACCTAGCCACATATTTTGGACCTATTTTCCTTTTATAGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGGTAAGGATTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA 792 41.92 MLPSHIFWTYFPFIGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPNPGMGKDFQPNKVDREALSLEWER 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3493782 3501071 - CaPI482276_08g001730.1 Cam08g0173 132224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0173 263 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 57 263 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cam08g0173 263 SUPERFAMILY ssDNA-binding transcriptional regulator domain 78 263 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cam08g0173 263 Pfam Whirly transcription factor 87 221 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cam08g0173 263 Gene3D Transcriptional Coactivator Pc4; Chain A 73 242 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0173 K26561 - - csv:101219085 391.734
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0173 Cam-Chr8:3493782 Cam08g1337 Cam-Chr8:19668010 7.00E-42 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g1337 . 71 274 Whirly Transcription Factor Family AT1G14410 74.8 7.4e-92 334.0
Cam08g0173 . 78 237 Whirly Transcription Factor Family AT1G71260 67.5 1.1e-59 226.9
Cam08g1337 . 57 274 Whirly Transcription Factor Family AT2G02740 72.1 1.8e-90 329.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012554 0 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52370 PF08536 Whirly 4.20E-54 CL0609 Cam TF