Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g0173 | ATGCTACCTAGCCACATATTTTGGACCTATTTTCCTTTTATAGGTGCTGAGCTTAAGATTCAACTGATAAATCACATAATACTCCATGAAAGCAGGAGTCAGCTATTTGAACAAATTGTGTGTAAGAAAGTTGGTCATGTTGGACATCCTTTGGGGTCGCATCCTTTCTCATCTCGAGTTGGCTTTCCAGATTCGAGACAAAATTTTACTCATACAGTCACAAAGAATGCAAGTGATCGAGTTTATGCTGCTTATAATGTATATAAGGGAAAAGCTGGACTCTCTATGAAGCCTTGCTTGCCAACTTTCACTAAATTAGAGTCTGGGAGTCTTGTAATTGATCGACGTGGCTCAGTAATGCTGTCATTCTTTCCTGCCATAGGCGAGCGCAAGTATGACTGGACAAAGAAACAGTTGTTTGCATTGTCTCCAACAGAAGTTGGTACTTTAATCAGTTTGGGTCCCAGAGATTCATGCGAATTCTTCCATGACCCTGGAATGCTTTCCAGTACTGCTGGTCAAGTAAGGAAGAGCTTAACAATTAAGGCCCATGCAGATGGCAATGGCTATTTCATCTCTTTGAATGTTGTTAATAACTCACAAAACACCAAAGATTTCTTGAGTGTTCCCTTCACAGCAGGCGAATTTTCTGTGATGAAGACGGCTTGCAGTTTTGCTCTGCCTCACATTCTTGGTTGGGACCGGCTGACCCAGCCTAATCCTGGCATGGGTAAGGATTTTCAACCAAATAAGGTGGATCGTGAAGCATTGAGTTTAGAGTGGGAAAGATGA | 792 | 41.92 | MLPSHIFWTYFPFIGAELKIQLINHIILHESRSQLFEQIVCKKVGHVGHPLGSHPFSSRVGFPDSRQNFTHTVTKNASDRVYAAYNVYKGKAGLSMKPCLPTFTKLESGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLNVVNNSQNTKDFLSVPFTAGEFSVMKTACSFALPHILGWDRLTQPNPGMGKDFQPNKVDREALSLEWER | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 3493782 | 3501071 | - | CaPI482276_08g001730.1 | Cam08g0173 | 132224 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g0173 | 263 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 57 | 263 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Cam08g0173 | 263 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 78 | 263 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cam08g0173 | 263 | Pfam | Whirly transcription factor | 87 | 221 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Cam08g0173 | 263 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 73 | 242 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam08g0173 | Cam-Chr8:3493782 | Cam08g1337 | Cam-Chr8:19668010 | 7.00E-42 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52370 | PF08536 | Whirly | 4.20E-54 | CL0609 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g0173 | K26561 | - | csv:101219085 | 391.734 |