Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0186 ATGTCCACATCCACCAGAACCAACCATATAGCTTCTACATTCTCCACATCTAATCTTCACCATTTGCACAATTTCTATTCTTTCCTTCATCATTCATTCCCTCCGGCCATGACTTCTTTGGCAGCCTCCACCGCCGCCGCCTCCCTTGGCGTCTCCGAAATGCTGAGAAATCCTCTCAGCTTCTCTGGTGCCTCCGCTAGGTCAGCTCCCTCTGCTTCTAGCCCAGCCACCTTCAAAACCGTTGCGCTTTTCGGGAAGAAGCCTGCCGCACCATCCAAGCCAAAGCCCTCTGCCGTCTCCCCAGTCAACGACGAGCTCGCCAAGTGGTATGGTCCGGACAGAAGGATTTTCTTGCCGGAAGGGCTGTTGGACCGATCGGAGATCCCTGAGTATTTGAACGGAGAAGTCCCCGGCGACTATGGTTACGATCCCTTTGGACTCAGCAAGAAGCCAGAGGACTTCAGCAAATACCAAGCGTTTGAGTTGATTCATGCAAGATGGGCCATGCTTGGAGCTGCTGGTTTCATCATCCCTGAGGCCTTCAACAAATTCGGAGCCAACTGCGGCCCCGAGGCTGTCTGGTTCAAGACTGGAGCTCTGCTTCTTGATGGAAATACATTGAATTACTTTGGAAACAACATTCCCATCAACCTCATCGTCGCGGTCATTGCTGAGGTTGTTCTTGTTGGTGGCGCTGAATATTACAGAATCATCAATGGCTTGAACTTTGAGGACAAGCTTCACCCCGGAGGGCCGTTCGACCCATTGGGGTTAGCAGACGACCCGGACCAAGCAGCGATTTTGAAGGTGAAGGAGATCAAGAATGGGAGATTGGCAATGTTTGCAATGCTAGGGTTTTACTTCCAAGCATATGTGACAGGAGAAGGGCCAGTGGAGAACTTGGCAAAGCATTTGAGTGATCCTTTTGGAAACAACTTGCTCACAGTCATTTCTGGGAATGCTGAAAGACTCGAAGGAGTCCACCAGTCTGTCACCTACAACCGTTCGTTTGTTCCAGATCATCCGTCCTTTCCAGATCTCGCGTTTGTTTCAAATCGTCCATCCGTTCCAGATCTGCTCGCATTCATCGTTCCAGATATGACCTTCGGCTTCTGTATTCACGATTTGTCGATTGCTCGCATTCGTCGATTTGTCGTCCGTCGTTCCAGATCATCAACTTGTCATCCTCCATTCCAAATCAGACAGACCGTTCCAAATCTAAGTCGTGGGTTGTTTGAGTTGTTTGATTGCTCGAAAGGATTAGGAAAAACCCTACATTCTTCTACAAGGAGAAACCCAAAAAATAAGGGAAATCAAATAGTGGGGATTTTGGGAATTGGGATGGCTTCCGCTGTGGACGGCTTCTTATTATTAAATTTAAAGCCACACTCTCTCCTCCCTAAACCTACAAACTTCTCTTTGTACTTTGGGAAAAGGGCACCGTCTCTTCAAATTCGAGCAGATTCCATGGCTACTGAGAGGCTGGGGATCAAAGTTGAGAAGAATCCACCTGAATCCAAGCTTACCCAACTCGGCGTTCGGCAATGGCCCAAGTGGGGGTGTGGGCCAAGCAAATTCCCATGGACATATTCGGACAAAGAGACATGCTATCTGCTAGAAGGAAAGGTAAAGGTTACTCCTGCTGGATCAGAGGAGTCAGTTGAGATTGGCGCTGGGGATTTGGTTGTGTTCCCAAAAGGAATGAGCTGCACTTGGGATGTCTCAGTTGCTGTGGATAAGCACTATAACTTTGGCTAG 1758 48.81 MSTSTRTNHIASTFSTSNLHHLHNFYSFLHHSFPPAMTSLAASTAAASLGVSEMLRNPLSFSGASARSAPSASSPATFKTVALFGKKPAAPSKPKPSAVSPVNDELAKWYGPDRRIFLPEGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLADDPDQAAILKVKEIKNGRLAMFAMLGFYFQAYVTGEGPVENLAKHLSDPFGNNLLTVISGNAERLEGVHQSVTYNRSFVPDHPSFPDLAFVSNRPSVPDLLAFIVPDMTFGFCIHDLSIARIRRFVVRRSRSSTCHPPFQIRQTVPNLSRGLFELFDCSKGLGKTLHSSTRRNPKNKGNQIVGILGIGMASAVDGFLLLNLKPHSLLPKPTNFSLYFGKRAPSLQIRADSMATERLGIKVEKNPPESKLTQLGVRQWPKWGCGPSKFPWTYSDKETCYLLEGKVKVTPAGSEESVEIGAGDLVVFPKGMSCTWDVSVAVDKHYNFG 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3849036 3862269 - CaPI482276_08g001860.1 Cam08g0186 132237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0186 585 SUPERFAMILY Chlorophyll a-b binding protein 108 317 - -
Cam08g0186 585 Gene3D Chlorophyll a/b binding protein domain 116 327 - -
Cam08g0186 585 CDD cupin_TM1112-like 516 584 - -
Cam08g0186 585 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 55 315 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Cam08g0186 585 Gene3D Jelly Rolls 486 584 IPR014710 -
Cam08g0186 585 SUPERFAMILY RmlC-like cupins 508 582 IPR011051 -
Cam08g0186 585 FunFam Chlorophyll a-b binding protein, chloroplastic 116 327 - -
Cam08g0186 585 Pfam Chlorophyll A-B binding protein 129 290 IPR022796 -
Cam08g0186 585 Pfam EutQ-like cupin domain 509 582 IPR008579 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam06g0092 Cam-Chr6:2804739 Cam08g0186 Cam-Chr8:3849036 1.10E-26 dispersed
Cam08g0186 Cam-Chr8:3849036 Cam10g1500 Cam-Chr10:28771723 1.40E-55 dispersed
Cam08g0186 Cam-Chr8:3849036 Cam02g1907 Cam-Chr2:32135436 1.10E-55 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0186 K08916 - csv:101218137 520.776