Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0204 ATGGATACCAAAGGTCGACTCATTGCTGGTTCTCATAACAGAAATGAGTTTGTTCTCATCAATGCTGATGAGGTTGCAAGAGTGACATCTGTGAAAGAGTTAAGTGGGCAAATTTGCCAGATCTGTGGGGATGAGATAGAAATCACCGTAGATGGAGAGCCATTTGTTGCCTGTAATGAATGTGCCTTTCCAGTTTGTAGACCTTGCTATGAATATGAAAGAAGAGAGGGCAATCAAGCTTGTCCTCAGTGCAAAACCAGATACAAGCGTCTCAAAGGCAGTCCTCGGGTTGAAGGTGATGAAGAAGAAGATGATATCGATGATCTTGAGAATGAGTTTGATATTGCAAACAAGGATCCTAGCAGTGCATCTGAGGCAATGCTTTATCCTCACCTTGCCGTTGGGCGTGGTTCTCATGTTAATGGTTCTGGAAATATGGCTTCTGACCTTGACTCCTCATCCGTTCCAACTGATATCCCTCTCCTGACCTATGGCCAAGAGGATGCTGGAATTTCCTCCGATAAGCATGCTCTAATTATTCCTCCTTTTATTAGCCGTGGAAAAAAGGTCCATCCAGCGCCATTCACTGATTCCATGTCTGCCAATCCAAGGCCAATGGATCCGAAGAAGGATTTAGCTGTGTATGGATATGGAACTGTTGCGTGGAAGGAAAGAATGGAAGACTGGCGGAAGAAACAAAATGAAAGACTTCAAGTAATTAAGCATGAGGGTGGAGGTGGAAAAGGTGATGACGAGCTCGATGATACAGATTTGCCTATGATGGATGAAGGGAGGCAACCGCTTTCCAGAAAACTGCCTATCCCCTCGAGCAAGATAAACCCATACAGAATGATAATCGTACTTCGTATTGTCATCCTTTGCCTCTTTTTCCACTATCGTATTCTTCATCCTGTCCATGAGGCATATGGGCTGTGGTTAACATCAGTAATCTGTGAGATATGGTTTGCTGCATCATGGATATTGGATCAGTTCCCAAAATGGTGCCCCATTGTCCGAGAAACTTACCTTGATCGGCTGTCGTTAAGATACGAAAAAGATGGCAAGCCATCAGAATTGGCTTCTATAGACGTTTATGTCAGTACAGTGGATCCATTGAAGGAGCCTCCTCTCATCACAGCAAACACCGTCCTATCTATTCTTGCCGTCGACTATCCGGTAGACAAGGTTTCATGCTATGTTTCTGATGATGGTGCTGCGATGCTTACTTTTGAAGCCCTTTCAGAAACTTCTGAGTTTGCAAGAAAGTGGGTTCCTTTCTGCAAGAAGTTCAATATTGAACCACGGGCCCCAGAATGGTATTTTGCCCAGAAGGTTGACTATTTGAAAGACAAAGTTGATCCAACATTTGTCAGGGAACGACGTGCAATGAAGAGGGACTACGAAGAATTTAAAGTTCGAATCAATGGGCTTGTTGCCATGGCTCAAAAAGTTCCTGAAGATGGTTGGACAATGCAGGATGGAACTCCATGGCCCGGGAACAATGTCCGGGATCATCCTGGAATGATTCAGGTATTCCTCGGTCAAAACGGTGTCCGTGACTTGGAGGGAAATGAATTACCTCGTCTAGTGTATGTATCTCGTGAGAAGAGGCCGGGATTTGATCACCACAAGAAAGCCGGTGCCATGAATTCTCTGGTGCGTGTCTCGGCAATTATCTCGAATGCTCCATACATTTTGAACGTTGATTGTGATCACTACATTAACAACAGCAAGGCACTTAGAGAAGCAATGTGTTTCATGATGGACCCAATTTCGGGAAAAAGAATATGCTATGTGCAGTTTCCACAAAGATTTGATGGGATTGATAGGCACGATCGATACTCTAATCGCAATGTTGTATTCTTCGATATCAACATGAAAGGATTGGATGGTATTCAAGGGCCGATATATGTCGGAACTGGATGTGTCTTTAGGAGGCAGGCTCTTTATGGCTATGATGCTCCTGCTAAGAAGAAAGCACCAAGAAGGACTTGCAACTGTCTTCCAAAATGGTGCTGCTGTTGCTGTGGAACTAGAAAGAAGACTAAAACAAAGACCAGTGATAAAAAGAAATTAAAGACCAAAGATACGTCGAAACAGATTCACGCACTTGAAAATATTGAAGAAGGAATCGAAGGAATAGATAACGAGAAATCATCTCTGATGCCCCAAGTTAAGTTTGAGAAGAAGTTTGGGCAATCACCAGCATTCATTGCTTCCACACTCATGGAAGATGGTGGTGTGCCTGGAGGAGGGACTTCTGCTTCGTTGTTGAAAGAAGCCATCCACGTAATCAGTTGCGGTTATGAAGATAAATCCGAGTGGGGTAAAGAGGTAGGGTGGATATATGGGTCTGTTACAGAGGATATTTTAACAGGTTTCAAGATGCATTGCCATGGATGGAGATCAGTTTATTGCATTCCTAAAAGGCCAGCATTCAAGGGTTCAGCTCCTATTAACTTGTCTGATCGTCTACACCAAGTTCTTCGGTGGGCACTTGGGTCAGTTGAAATTCTGTTGAGTAGGCACTGTCCAATATGGTACGGATATGGATGTGGTTTGAAGTGGCTCGAGCGTTTCTCATACATAAACTCCGTTGTTTATCCATTGACGTCAGTTCCACTGATTGCTTATTGTACGCTGCCAGCTGTCTGCCTGCTTACAGGGCAGTTTATCGTCCCTGAGCTAAGCAACTATGCCAGTATAATTTTCATGGCACTCTTCATCTCTATAGCAGCAACCGGTATCCTAGAAATGCAGTGGGGAGGTGTTGGGATCCATGATTGGTGGAGAAATGAGCAGTTCTGGGTTATCGGTGGTGCTTCGTCTCATCTTTTTGCACTTTTCCAGGGTCTGCTAAAGGTTTTGGCTGGTGTTAACACAAATTTCACCGTCACATCCAAAGGAGGAGACGATGGGGAGTTTGCCGAGCTTTACCTCTTCAAGTGGACGTCGTTGTTGGTCCCTCCCTTGACCTTATTGATCATAAACATTATTGGAGTAGTGGTCGGAATTTCAGATGCCATCAACAATGGTTACGACTCATGGGGCCCGCTCATTGGTAAGCTGTTCTTTGCATTCTGGGTGATTGTCCATCTGTATCCATTCCTCAAGGGTTTGATGGGGAAGCAAGACAAGGTACCAACCATTATCATTGTGTGGTCAATCCTTCTATCATCCATATTGTCACTTTTATGGGTCCGGATCAACCCCTTCCTCGACAAGGGTGGCATTGTGTTGGAAGTTTGCGGGTTAAACTGTGACGACTAA 3270 44.34 MDTKGRLIAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRLKGSPRVEGDEEEDDIDDLENEFDIANKDPSSASEAMLYPHLAVGRGSHVNGSGNMASDLDSSSVPTDIPLLTYGQEDAGISSDKHALIIPPFISRGKKVHPAPFTDSMSANPRPMDPKKDLAVYGYGTVAWKERMEDWRKKQNERLQVIKHEGGGGKGDDELDDTDLPMMDEGRQPLSRKLPIPSSKINPYRMIIVLRIVILCLFFHYRILHPVHEAYGLWLTSVICEIWFAASWILDQFPKWCPIVRETYLDRLSLRYEKDGKPSELASIDVYVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEWYFAQKVDYLKDKVDPTFVRERRAMKRDYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDLEGNELPRLVYVSREKRPGFDHHKKAGAMNSLVRVSAIISNAPYILNVDCDHYINNSKALREAMCFMMDPISGKRICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKAPRRTCNCLPKWCCCCCGTRKKTKTKTSDKKKLKTKDTSKQIHALENIEEGIEGIDNEKSSLMPQVKFEKKFGQSPAFIASTLMEDGGVPGGGTSASLLKEAIHVISCGYEDKSEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSVPLIAYCTLPAVCLLTGQFIVPELSNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKGGDDGEFAELYLFKWTSLLVPPLTLLIINIIGVVVGISDAINNGYDSWGPLIGKLFFAFWVIVHLYPFLKGLMGKQDKVPTIIIVWSILLSSILSLLWVRINPFLDKGGIVLEVCGLNCDD 1089
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4170038 4175535 - CaPI482276_08g002040.1 Cam08g0204 132255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0204 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Cam08g0204 1089 Pfam Zinc-binding RING-finger 30 105 IPR027934 -
Cam08g0204 1089 CDD mRING-HC-C4C4_CesA 37 87 - -
Cam08g0204 1089 Pfam Cellulose synthase 362 1076 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cam08g0204 1089 SUPERFAMILY RING/U-box 28 107 - -
Cam08g0204 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 871 IPR029044 -
Cam08g0204 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cam08g0204 1089 Coils Coil 99 119 - -
Cam08g0204 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 282 1057 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cam08g0204 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 508 654 IPR029044 -
Cam08g0204 1089 FunFam Cellulose synthase 479 653 - -
Cam08g0204 1089 FunFam Cellulose synthase 21 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g1613 Cam-Chr1:29713113 Cam08g0204 Cam-Chr8:4170038 0.00E+00 dispersed
Cam08g0204 Cam-Chr8:4170038 Cam11g1150 Cam-Chr11:22586771 0.00E+00 dispersed
Cam08g0204 Cam-Chr8:4170038 Cam02g0928 Cam-Chr2:13097730 1.30E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0204 K10999 - csv:101214061 2113.19