Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0704 ATGACGACGCTCTCTGTGACATTTGATGTATGTGACGACGGTGCAGCTGATATCAACGGCGGCTTAAGCCTTGTTCTTCGGGCAACCGTAGCAGCAATATGCGCGAGGCAGTCGGTCTATGTCTTTGCCTCCGAGTCTCTGATTCCCTTCTCCATTTTGGCCTCTCTCTCTCTTCTATCTCTCTCTCAGTTATTGTACCCCGAGAGACCTATGAACATGCTAGGTTCACATGAGGAGGAAGATGATCATGGTGAGGTCTTCCTTGATGAAGCTGACATAATCAATGAAATTCCAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAGGGCTCCGATGATGAATATTTTGATGAGGCTGATGATTCCGTTCATACTTTTACTGGCCATACTGGTGAGGTTTACACAGTGGTCTGTAGTCCAATAGATGCCACATTAGTTGCAACAGGGGGTGGAGATGACAAAGGATTTATGTGGAAGATTGGCCGAGGAGATTTTGCCCAGGAGCTTAGTGGTCACAAGGATTCCGTATCTAGCTTAGCATTTAGTGCAGATGGACAACTACTTGCATCAGGGAGTTTTGATGGGCTTATCCAAATTTGGGATACTTCATCTGGGAAACTTAAATGCGCACTTGAAGGCCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCCACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTAGTGTTACATGCGGTGACTTTACTCCGGATGGTAAAATGATATGCACGGGTTCTGATGATGCAACGATGAGGATATGGAATCCAAGAAGTGGAGAAAATATTCATGTCGTGAGAGATTTCCGCCAGCCGTTTCGTCTCAGCTGTCGAACAACACCCTCGACCCGACGCTGTCGCGCGCTTCCTTGCCCAGGTCATCCCTATCATACCGAAGGATTGACTTCTCTAGCACTCACTTCTGATTCAACCCTTGCTCTTACTGGTTCAAAAGATGGTTCTGTTCATATTGTGAATATAGCAACTGGAAAGGTAGTGAATTCTCTGGTTTCCCATTCAGATTCAATTGAATGCATCGGTCTAGCACCAAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTTGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA 1464 46.72 MTTLSVTFDVCDDGAADINGGLSLVLRATVAAICARQSVYVFASESLIPFSILASLSLLSLSQLLYPERPMNMLGSHEEEDDHGEVFLDEADIINEIPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVYTVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGLIQIWDTSSGKLKCALEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGKMICTGSDDATMRIWNPRSGENIHVVRDFRQPFRLSCRTTPSTRRCRALPCPGHPYHTEGLTSLALTSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5726501 5750789 + CaPI482276_08g007040.1 Cam08g0704 132755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0704 487 ProSitePatterns Trp-Asp (WD) repeats signature. 386 400 IPR019775 -
Cam08g0704 487 Pfam WD domain, G-beta repeat 251 287 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 444 481 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 361 399 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 407 440 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 208 245 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 328 355 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 168 203 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Pfam WD domain, G-beta repeat 124 160 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Gene3D - 317 410 IPR015943 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 208 - -
Cam08g0704 487 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 76 485 IPR051179 -
Cam08g0704 487 FunFam Angio-associated migratory cell protein-like protein 121 485 - -
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 255 292 - -
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 408 440 - -
Cam08g0704 487 Gene3D - 109 214 IPR015943 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 450 487 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 401 - -
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 255 296 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 Gene3D - 411 486 IPR015943 GO:0005515(InterPro)
Cam08g0704 487 Gene3D - 215 316 IPR015943 GO:0005515(InterPro)
Cam08g0704 487 CDD WD40 169 482 - -
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 450 487 - -
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 170 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 366 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 408 449 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 ProSitePatterns Trp-Asp (WD) repeats signature. 190 204 IPR019775 -
Cam08g0704 487 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Cam08g0704 487 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Cam08g0704 487 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 248 287 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 443 482 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 313 357 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 206 245 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 121 161 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 164 203 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 402 440 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SMART WD40_4 360 399 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 408 IPR001680 GO:0005515(InterPro)
Cam08g0704 487 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 121 474 IPR011047 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0704 K24725 - - csv:101211245 763.066
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42