Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0708 ATGTGCTACCTGAAGCTGGCGAAACAGGGCGGCGACGGCGGCGGAGACGAGCTGGAGGGGATGTTCTCGTCGTCGGCGGGGGAGTTAATGGCCATGGTATCGGCTTTGACTCATGTCATTTCCGGCGGCGCTGCTGATCCATCTGGGGTTGGTTATTCGTCTGGCTCTGCTGCTCCGACAACGGTAGCGGTGGCGACGGCGGGGGGTTGTAGGAAAAGAGAGAGGGAAGAAGAAGGAGAAAGTGGAATAATGTGGGAAAGGAATAGAGGTGGAATTGTGGACTTCAGAGCAATACAAAGTTATTCCATGCCCTCCCCTGCAATTTTCGTAAAAGAAGAAGGAGGTTTAAGTTCAAGTAACAATATCTCCGCCGTGACGGCGGCAACAACGGCGGCTACCACGACGATAGCATTTTCCGGCGTGGAGAAAACAAGAAGATACAGAGGAGTAAGACAGAGGCCATGGGGAAAATGGGCTGCCGAAATCCGTGACCCTCAGAAAGCCGCCCGAGTCTGGCTCGGCACTTTCGACACCGCGGAGGCTGCCGCCCGAGCCTACGACGGCGCTGCCTTGCGCTTCCGAGGCAGCAAAGCCAAGCTCAACTTCCCTGAATTCATCTCTGCTTTTCCACCGTCGTCTTTGCCGCCGGCCGCTCATTTAGCGCCGTCTCCAGTGGTGGCACCCCCGCAAGATGCCCTCGAGAATTATCTACAGTATTCTTATTTGCTTCAAAACTCCGGCGAGACCTCCAGCCAGCCGGTGCCGACGTTTGAGAGGGTGCTCTCTAATTCGCCATTTGTGAATCCATCCTCTTCGGTTTCTTCTTCAGGCGTTTCGGATTTCGCGTTTCCATTTTCTCAGCAGCAGCTTAGAAACTACCGGCCACCGCAAAATCAGAGCCAAGGCGGTGGGGGTTCGTCGCCGACGGGATTCAGCTATCGTCCTCCGGCGACCGGTTGA 960 55.73 MCYLKLAKQGGDGGGDELEGMFSSSAGELMAMVSALTHVISGGAADPSGVGYSSGSAAPTTVAVATAGGCRKREREEEGESGIMWERNRGGIVDFRAIQSYSMPSPAIFVKEEGGLSSSNNISAVTAATTAATTTIAFSGVEKTRRYRGVRQRPWGKWAAEIRDPQKAARVWLGTFDTAEAAARAYDGAALRFRGSKAKLNFPEFISAFPPSSLPPAAHLAPSPVVAPPQDALENYLQYSYLLQNSGETSSQPVPTFERVLSNSPFVNPSSSVSSSGVSDFAFPFSQQQLRNYRPPQNQSQGGGGSSPTGFSYRPPATG 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5922821 5924828 + CaPI482276_08g007080.1 Cam08g0708 132759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0708 319 ProSiteProfiles AP2/ERF domain profile. 146 203 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0708 319 PRINTS Ethylene responsive element binding protein signature 169 185 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0708 319 PRINTS Ethylene responsive element binding protein signature 147 158 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0708 319 SMART rav1_2 146 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0708 319 PANTHER DNA-BINDING DOMAIN 124 255 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cam08g0708 319 MobiDBLite consensus disorder prediction 287 319 - -
Cam08g0708 319 Pfam AP2 domain 146 195 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0708 319 SUPERFAMILY DNA-binding domain 146 204 IPR016177 GO:0003677(InterPro)
Cam08g0708 319 FunFam Ethylene-responsive transcription factor 2 145 204 - -
Cam08g0708 319 CDD AP2 146 204 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0708 319 Gene3D AP2/ERF domain 145 204 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0708 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0708 Cam-Chr8:5922821 Cam08g1150 Cam-Chr8:17847150 4.50E-43 dispersed
Cam11g1588 Cam-Chr11:28617496 Cam08g0708 Cam-Chr8:5922821 2.20E-15 dispersed
Cam08g0708 Cam-Chr8:5922821 Cam01g1620 Cam-Chr1:29779819 1.40E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1351 Blo01g01736 Blo12g00779 Bda01g00864 Bda03g00400 Bpe02g00207 Bpe04g00363 Bma04g00381 Bma01g02513 Cmo04g02571 Cmo15g00593 . . . . . . . Bhi04g02173 . . . . . . Cla08g00268 Cam08g0708 Cec08g0269 Cco08g0355 Clacu08g0418 . Cre08g0246 Cone4ag1483 Cone7ag1461 Cone17ag0776 Cone20ag0368 . . . Cme03g00299 Blo17g00139 Blo18g00150 Bda11g00867 Bda13g01423 Bpe02g01101 Bpe14g00434 . Bma02g00158 . . Cmo09g01245 . . Car04g02363 Car09g01066 . . . . . . . . . . . . . . . . Lsi08g00564 . Chy03g00496 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012006 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 0 1 2 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52375 PF00847 AP2 4.40E-14 CL0081 Cam TF