Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0782 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8903032 8905691 - CaPI482276_08g007820.1 Cam08g0782 132833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0782 431 CDD F-box_AtTLP-like 53 97 - -
Cam08g0782 431 MobiDBLite consensus disorder prediction 367 387 - -
Cam08g0782 431 Gene3D - 48 101 - -
Cam08g0782 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cam08g0782 431 FunFam Tubby-like F-box protein 110 431 - -
Cam08g0782 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cam08g0782 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cam08g0782 431 PANTHER TUBBY-RELATED 47 430 - -
Cam08g0782 431 FunFam Tubby-like F-box protein 48 101 - -
Cam08g0782 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cam08g0782 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cam08g0782 431 Pfam Tub family 114 426 IPR000007 -
Cam08g0782 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cam08g0782 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0782 K19600 - - csv:101206041 845.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1157 Cam-Chr5:10798164 Cam08g0782 Cam-Chr8:8903032 2.30E-191 dispersed
Cam06g0544 Cam-Chr6:7510890 Cam08g0782 Cam-Chr8:8903032 4.50E-109 dispersed
Cam08g0782 Cam-Chr8:8903032 Cam08g1140 Cam-Chr8:17745688 7.10E-201 dispersed
Cam08g0782 Cam-Chr8:8903032 Cam05g0673 Cam-Chr5:5886305 5.00E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1377 Blo01g01728 Blo12g00786 . Bda03g00391 Bpe02g00213 Bpe04g00353 Bma04g00369 Bma01g02507 Cmo04g02565 Cmo15g00602 . . . . . . Cpe13g00683 Bhi04g01774 Tan11g1139 . . . . . Cla08g00355 Cam08g0782 Cec08g0347 Cco08g0447 Clacu08g0497 . Cre08g0325 . . . . . . . Cme03g00315 . . Bda11g00874 . . . . . . . . . . Car04g02358 Car15g00552 Cpe01g02118 . . . . . . . . . . . . . . . Lsi08g00555 . Chy03g00507 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam08g0782 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.8e-178 620.5
Cam05g1157 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cam08g1140 . 1 432 TUB Transcription Factor Family AT1G76900 68.6 1.7e-168 589.3
Cam05g0673 . 13 387 TUB Transcription Factor Family AT1G76900 51.2 3.2e-111 399.1
Cam05g1157 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.0e-102 367.1
Cam08g0782 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.7e-94 341.3
Cam08g1140 . 175 432 TUB Transcription Factor Family AT1G25280 70.0 1.5e-92 336.3
Cam05g0673 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.7e-70 261.5
Cam05g2064 . 315 542 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Cam01g2002 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 8.6e-64 240.7
Cam06g0544 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Cam05g0673 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Cam06g0544 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Cam08g0782 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.7e-84 308.5
Cam08g1140 . 112 432 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Cam05g1157 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.2e-83 303.9
Cam05g2064 . 251 542 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Cam07g1053 . 117 383 TUB Transcription Factor Family AT5G18680 50.3 4.2e-67 251.9
Cam01g2002 . 1 413 TUB Transcription Factor Family AT2G18280 61.5 9.2e-139 490.3
Cam05g2064 . 137 542 TUB Transcription Factor Family AT2G18280 59.0 4.4e-125 444.9
Cam05g1157 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.6e-119 425.2
Cam08g0782 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Cam05g0673 . 1 387 TUB Transcription Factor Family AT2G18280 54.1 3.8e-116 415.2
Cam08g1140 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Cam06g0544 . 1 362 TUB Transcription Factor Family AT2G18280 51.6 2.9e-100 362.5
Cam05g0673 . 1 387 TUB Transcription Factor Family AT2G47900 68.9 6.8e-161 563.9
Cam06g0544 . 1 383 TUB Transcription Factor Family AT2G47900 64.5 5.6e-147 517.7
Cam08g0782 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Cam08g1140 . 1 432 TUB Transcription Factor Family AT2G47900 56.6 2.5e-131 465.7
Cam05g1157 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.5e-131 463.8
Cam05g2064 . 146 542 TUB Transcription Factor Family AT2G47900 55.4 4.6e-117 418.3
Cam01g2002 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 4.8e-114 408.3
Cam07g1053 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 8.7e-100 360.9
Cam09g0341 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 2.9e-73 272.3
Cam08g0782 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cam05g1157 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Cam08g1140 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 4.1e-141 498.0
Cam05g0673 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 3.6e-105 378.6
Cam05g2064 . 204 542 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Cam06g0544 . 49 362 TUB Transcription Factor Family AT1G43640 50.4 5.4e-93 338.2
Cam05g2064 . 170 542 TUB Transcription Factor Family AT1G47270 64.4 1.0e-134 476.9
Cam01g2002 . 33 413 TUB Transcription Factor Family AT1G47270 57.0 1.0e-121 433.7
Cam05g1157 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cam08g0782 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Cam08g1140 . 48 432 TUB Transcription Factor Family AT1G47270 55.0 4.2e-112 401.7
Cam05g0673 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Cam07g1053 . 50 383 TUB Transcription Factor Family AT1G53320 77.7 4.8e-153 537.7
Cam05g0673 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 3.7e-97 351.7
Cam05g1157 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.4e-82 301.6
Cam06g0544 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.4e-82 301.6
Cam08g1140 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 4.9e-81 298.1
Cam08g0782 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Cam05g2064 . 255 542 TUB Transcription Factor Family AT3G06380 52.9 3.5e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000394 5 6 5 8 5 3 5 3 3 3 3 3 5 3 3 5 3 6 5 3 3 3 2 3 3 3 3 14 4 2 125
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52377 PF01167 Tub 1.20E-118 CL0395 Cam TF