Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0782 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8903032 8905691 - CaPI482276_08g007820.1 Cam08g0782 132833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0782 431 CDD F-box_AtTLP-like 53 97 - -
Cam08g0782 431 MobiDBLite consensus disorder prediction 367 387 - -
Cam08g0782 431 Gene3D - 48 101 - -
Cam08g0782 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cam08g0782 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cam08g0782 431 FunFam Tubby-like F-box protein 110 431 - -
Cam08g0782 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cam08g0782 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cam08g0782 431 PANTHER TUBBY-RELATED 47 430 - -
Cam08g0782 431 FunFam Tubby-like F-box protein 48 101 - -
Cam08g0782 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Cam08g0782 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cam08g0782 431 Pfam Tub family 114 426 IPR000007 -
Cam08g0782 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cam08g0782 431 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g1157 Cam-Chr5:10798164 Cam08g0782 Cam-Chr8:8903032 2.30E-191 dispersed
Cam06g0544 Cam-Chr6:7510890 Cam08g0782 Cam-Chr8:8903032 4.50E-109 dispersed
Cam08g0782 Cam-Chr8:8903032 Cam08g1140 Cam-Chr8:17745688 7.10E-201 dispersed
Cam08g0782 Cam-Chr8:8903032 Cam05g0673 Cam-Chr5:5886305 5.00E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52377 PF01167 Tub 1.20E-118 CL0395 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0782 K19600 - csv:101206041 845.884