Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0789 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCTGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCAGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATGTGCCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATAACAACAACAACGCATCACAACCGTCACCACCGCCCCCGCCACCGCCACCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTGATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGAAGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCAGCTTCAGTGAGTGCTGCAGAGTGA 1920 46.98 MLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINVPSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNNNNNASQPSPPPPPPPPSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDEEDEEEEDEGGGNYEIVASKPASVSAAE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9368873 9371462 + CaPI482276_08g007890.1 Cam08g0789 132840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0789 639 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cam08g0789 639 MobiDBLite consensus disorder prediction 599 623 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 566 639 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 206 231 - -
Cam08g0789 639 Coils Coil 284 315 - -
Cam08g0789 639 Gene3D - 67 128 - -
Cam08g0789 639 Gene3D - 462 523 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 372 413 - -
Cam08g0789 639 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Cam08g0789 639 FunFam Trihelix transcription factor GT-2 67 128 - -
Cam08g0789 639 FunFam Trihelix transcription factor GT-2 462 523 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 156 238 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 162 181 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 363 416 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 566 591 - -
Cam08g0789 639 PANTHER FI21293P1 38 609 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 259 280 - -
Cam08g0789 639 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Cam08g0789 639 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Cam08g0789 639 PRINTS Proline rich extensin signature 203 215 - -
Cam08g0789 639 PRINTS Proline rich extensin signature 167 183 - -
Cam08g0789 639 PRINTS Proline rich extensin signature 374 399 - -
Cam08g0789 639 PRINTS Proline rich extensin signature 215 236 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 22 54 - -
Cam08g0789 639 SMART sant 63 125 IPR001005 -
Cam08g0789 639 SMART sant 458 520 IPR001005 -
Cam08g0789 639 CDD GT1 65 130 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 1 67 - -
Cam08g0789 639 CDD GT1 461 525 - -
Cam08g0789 639 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0118 Cam-Chr1:1458956 Cam08g0789 Cam-Chr8:9368873 1.60E-93 dispersed
Cam01g1103 Cam-Chr1:16613499 Cam08g0789 Cam-Chr8:9368873 2.40E-34 dispersed
Cam02g0075 Cam-Chr2:1854573 Cam08g0789 Cam-Chr8:9368873 6.90E-91 dispersed
Cam06g1006 Cam-Chr6:15902021 Cam08g0789 Cam-Chr8:9368873 3.20E-37 dispersed
Cam08g0789 Cam-Chr8:9368873 Cam10g1891 Cam-Chr10:33006809 1.20E-34 dispersed
Cam08g0789 Cam-Chr8:9368873 Cam08g0790 Cam-Chr8:9512631 1.40E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52378 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0789 - - - 0.0