Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0880 ATGATGTTCTTCTGGACGAAGAACAATTCGTCAAATCTCAACTTATTGTTCTTCTCAGAGCTCCAATTCCTTTTCAGTAAATCGATTATGTTCATTCAGGTTTCGTGTGGCGAATTTGATCATTCATTCTGGCGCTCTTTTTTTTTTTCAAAATGTCTGGAGTGCTTCCTTAACGTTGTTAGGGCCCTCGGAATGGGATCATGCCTCTCTGGGGACCGGAACAAGCGAACGATCCCTTATTCTGAGCTTGCTTCCACTTCTCGTGATGATGGCGTTATTAGGCGAAGGAATTCCAAGAGGAAGATTACGAGAAAGGGTTCTTCCCCCTCGAATGACTCTTCAAGGGAGATGTCGCTTCATCGAGTTCCCGGCCGGATGTTTTTGAATGGAACAACTGATCATGCCTCGCTCTTTACTAGGCAAGGCAAGAAAGGCGTCAATCAGGATGCTATGATTGTTTGGGAGAATTTTGGTTCAAAAGAAGATACAATATTTTGTGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAATGCTCAGTGGGAGTTGGATGCTACCAGAAAGGAAGGGCAAAATGACATCAGATGTCAAGTGTCTCCACCAATGCTGGTTAACAAGGACTCTGGAACCTCTCATTGTGATCCTGGTCATCAGGGAAGTTACAGTGACATTTATATCATGCTGAAAGAGTCTTTTCTAAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATCGATTGCTATACCAGTGGTACAACATCAGTTGCATTGGTCAAACAGGGTCGGGATCTTATCATTGGAAATGTTGGGGACTCGCGGGCTGTTTTAGGTACCAGAGATGAATCTAACTCTCTCATTGCAGTTCAGTTGACCGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAGCCTGAGATTTTTCGGGTTTGGCTTCCCAACAATGATTCTCCTGGGCTTGCTATGGCCAGAGCCTTCGGAGATTTCTGTTTGAAAGATTTTGGTGTGATAGCCGTGCCTGATGTTTCTTATTGTCATCTTACTGAGAACGATGAGTTTGTGGTACTGGCTACCGATGGGGTTTGGGATGTTCTCTCAAACGAAGAGGTTGTGGCAATTGTTGCATCATCTCCGAGATCTTCTGCAGCTCGTATCCTTGTGGACTCAGCTACTCGAGCATGGAGAATAAAGTACCCTACTGCCAAGGTGGATGATTGTGCCGTAGTCTGCCTGTACCTGGACTCTAATGAAAGTACTGCAGTGACAGCTAAAAAAAAGGAGTTCACCAATGACATGGAAACTTAG 1401 44.25 MMFFWTKNNSSNLNLLFFSELQFLFSKSIMFIQVSCGEFDHSFWRSFFFSKCLECFLNVVRALGMGSCLSGDRNKRTIPYSELASTSRDDGVIRRRNSKRKITRKGSSPSNDSSREMSLHRVPGRMFLNGTTDHASLFTRQGKKGVNQDAMIVWENFGSKEDTIFCGVFDGHGPFGHMVAKKVRDSLPLKLNAQWELDATRKEGQNDIRCQVSPPMLVNKDSGTSHCDPGHQGSYSDIYIMLKESFLKAFKVMDKELKLHPYIDCYTSGTTSVALVKQGRDLIIGNVGDSRAVLGTRDESNSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPEIFRVWLPNNDSPGLAMARAFGDFCLKDFGVIAVPDVSYCHLTENDEFVVLATDGVWDVLSNEEVVAIVASSPRSSAARILVDSATRAWRIKYPTAKVDDCAVVCLYLDSNESTAVTAKKKEFTNDMET 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13030032 13034157 - CaPI482276_08g008800.1 Cam08g0880 132931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0880 466 CDD PP2Cc 134 445 IPR001932 -
Cam08g0880 466 SMART PP2C_4 123 443 IPR001932 -
Cam08g0880 466 MobiDBLite consensus disorder prediction 94 117 - -
Cam08g0880 466 Pfam Protein phosphatase 2C 146 419 IPR001932 -
Cam08g0880 466 SUPERFAMILY PP2C-like 133 446 IPR036457 -
Cam08g0880 466 PANTHER PROTEIN PHOSPHATASE 111 444 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cam08g0880 466 Gene3D - 129 447 IPR036457 -
Cam08g0880 466 ProSiteProfiles PPM-type phosphatase domain profile. 134 445 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0880 Cam-Chr8:13030032 Cam11g0973 Cam-Chr11:16193590 1.10E-138 dispersed
Cam08g0880 Cam-Chr8:13030032 Cam02g1797 Cam-Chr2:31062390 4.00E-109 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0880 - - - 0.0