Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0887 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATGATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGATATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGATGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAATCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTAGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCGTCAACGCCATTGA 1779 44.24 MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDAEDFVDDDTDDYFESRRREQNYMILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSSDSATHWSCEHCTFVNIRSATTCEMCRQRH 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13182191 13188980 + CaPI482276_08g008870.1 Cam08g0887 132938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0887 592 CDD Rcat_RBR_ARI7-like 294 348 - -
Cam08g0887 592 ProSitePatterns Zinc finger RanBP2-type signature. 569 588 IPR001876 -
Cam08g0887 592 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 GO:0008270(InterPro)
Cam08g0887 592 CDD RING-HC_ARI6-like 137 198 - -
Cam08g0887 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cam08g0887 592 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Cam08g0887 592 SMART ibrneu5 209 271 IPR002867 GO:0008270(InterPro)
Cam08g0887 592 SMART ibrneu5 275 345 IPR002867 GO:0008270(InterPro)
Cam08g0887 592 FunFam RBR-type E3 ubiquitin transferase 272 522 - -
Cam08g0887 592 SUPERFAMILY Ran binding protein zinc finger-like 565 590 IPR036443 -
Cam08g0887 592 MobiDBLite consensus disorder prediction 552 566 - -
Cam08g0887 592 MobiDBLite consensus disorder prediction 1 15 - -
Cam08g0887 592 MobiDBLite consensus disorder prediction 523 566 - -
Cam08g0887 592 Pfam IBR domain 293 333 - -
Cam08g0887 592 CDD BRcat_RBR_ANKIB1 216 280 - -
Cam08g0887 592 Gene3D - 267 522 - -
Cam08g0887 592 SUPERFAMILY RING/U-box 137 218 - -
Cam08g0887 592 MobiDBLite consensus disorder prediction 1 21 - -
Cam08g0887 592 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 73 112 IPR048962 -
Cam08g0887 592 SMART zf_4 567 591 IPR001876 -
Cam08g0887 592 Pfam Ariadne domain 358 519 IPR045840 -
Cam08g0887 592 SUPERFAMILY RING/U-box 290 338 - -
Cam08g0887 592 Coils Coil 357 377 - -
Cam08g0887 592 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cam08g0887 592 SUPERFAMILY RING/U-box 210 278 - -
Cam08g0887 592 Gene3D - 562 592 - -
Cam08g0887 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 91 396 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cam08g0887 592 MobiDBLite consensus disorder prediction 523 543 - -
Cam08g0887 592 FunFam RBR-type E3 ubiquitin transferase 134 223 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0887 Cam-Chr8:13182191 Cam11g0915 Cam-Chr11:13101398 1.70E-125 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0887 K11968 - csv:101223037 1152.5