Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0895 ATGTTGAATTTTGGGACATCTGAAGTGAAAGTGTCTTCATTGTTGATTGATAGTGGCTCATGGGATGAGAATAAGCCTGGGATATTCCTTCGTTCTCGGGCTACACCAGGCCAGAGCGCGGCAACAAGCAGCTCAGATGTTGTCTTCAGAAGCACCCACGGGGAATTTTATCAATCCAATCTAGCTCTTACATCGCCCATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGCTAATGCTGTTCCAGTTGAAAAAAATTTGCGGCGGTCTCAACGACAGAAGAGGAGGCGGACAAATTTTAGCGGTTACACAGATTCTGAAGATGAAGACTTAATGAGTCCCAAGTATAAAATGCTGAGGAGTCAGAGGGCTAATAACTCGAATAAAAATGTTTTTTCTTCTCCAAAGCATAAAAAAAGCATGGAGAACAGACCAACACCTAGGCGTGAGGGATTACGACCGCGTCATTCACGATTAGTTTCTAGAGACCGCTTGAATTCAGAATCAGATGATGAACAAGGTAGCTCAGAAGATAAAGGAAGCCAAGATGAGATTGAGAATGGGAATGATATGGAGGATAATGATGTGGATGATATTCAAAATGATGATGAGGGTGAGCCTGAACCTGAGGATGAGGGTGAGGAAGATGGTGATGATGAAGGAGGTGAAGAAGAACAAGAGGGACGTAGACGATATGATCTTCGAAACCGTCCTGATGCTCGTAGACTCTCCATAGGTGAAGGTAAACCAAGACCAAGATCTCCTCGCAGAGTATTACATCAAGGAATGGGGACTAAGGTTGGAAGAGATGTAAGGAGGGGTGGATCAAGAGTTCATAAACGTCGTATGGCGAGGATTGAAGATTCTGATGATTCCCTTCTTGTGGATGAGCTGGACCAAGCTCCTGGTATACCATGGGCACGAGGTGGAAGTAGATCTGGCCCACCTTGGCTGTTTGGAGGATTGGATATGCATGGGACTGCGTCTTGGGGATTGAATATCGCAGCATCTGGTTGGGGTCACCAAAGTGATGCATTTTCGAGTTTAACTTCTGGTATTCAAACGGCTGGACCAAGCTCTAAGGGTGGGGCAGATATTCAACCTGTACAAGTTGATGAAAGTGTTAGCTTTGATGACATTGGTGGCTTGTCAGAATATATAGATGCTTTGAAGGAGATGGTATTCTTTCCTTTACTTTACCCCGATTTCTTTGCAAGTTATCATATAACCCCACCAAGAGGGGTGCTGTTATGTGGGCCTCCAGGTACTGGGAAAACATTAATTGCTAGAGCATTAGCCTGTGCTGCATCAAAGGCTGGCCAAAAGGTCAGTTTCTACATGCGGAAGGGTGCTGATGTTCTAAGCAAGTGGGTGGGTGAGGCTGAGCGACAATTGAAACTACTTTTTGAAGAAGCACAAAGGAATCAGCCTTCTATAATATTCTTTGATGAAATTGATGGGCTTGCTCCAGTTAGATCAAGCAAACAGGAGCAAATTCATAATTCCATCGTTTCCACATTGCTTGCTTTGATGGATGGGCTAGACTCTCGCGGTCAGGTTGTATTGATTGGAGCTACTAATCGGATTGATGCCATTGATGGAGCCCTACGCCGCCCCGGTCGTTTTGATCGTGAGTTTAACTTTCCATTGCCTGGATGTGATGCACGTGCTGAGATCTTGACCATTCACACGCGCAAGTGGAAGAATCCTCCTTCAGAGGAGCTTCGATCAGAACTTGCTGCTACTTGTGTAGGTTATTGTGGTGCTGATTTGAAGGCTCTCTGCACTGAGGCTGCTATTCGAGCTTTCCGCCAAAAGTATCCTCAGGTTTACACCAGTGATGACAAGTTTCTAATAGATGTTGAATCTGTCACGGTTGAGAAGTATCATTTTGTTGAAGCAATGTCCACAATTACTCCTGCTGCCCATCGAGGTGCTGTAGTGCATTCTCGGCCGCTATCTTCTGTAGTTGCACCATGTTTGCAAAGACATCTTCATAAAGCCATGATTTTCTTATCTGATGCCTTTCCATTAGCAGCATCATCTGAGTTTGCCAAACTGTCCATGCTTTCTTTTGGATCTGCAATTCCACTAGTGTGTAGACCACGACTTTTGCTTTGTGGTGGTGAAGACGTTGGGTTGGATCACCTTGGTCCTGCGATCTTACATGAACTGGAGAAATTTCCTGTTCATTCTCTGGGACTTCCGTCACTGCTTTCTGATCCTAGTGCAAAGACACCTGAGGAAGCATTGGTACATATATTTGGTGAAGCAAGGAGGACTACTCCATCAATACTCTACCTACCGCAGTTTCATCGTTGGTGGGAGACAGCAGATCAGCAGTTGAGAGCTGTTTTATTGACTCTGTTAGAGGAGCTACCTTCTGACCTACCCATATTACTGCTCGGAACATCCTTAGTCTCGCTTGTTGAAGTTGATGAGAAAGCTTCTATGATTTTTCCGGATCGCGGGATCTATCAAGTCAGTCCACCGTCCAGTGAAGATAAGTCTTTGTTTTTTACCCATTTAATTGAGGCTGCTTCCTCGGTTTTGCTGGAGGGCATGGATAAAAAAGTGCAAGTGTCTGGAACCCTTCCCGAGCTTCCCAAGGCTCCAGTAGTTGCCAGTGGACCAAAGGTTTCTGAGTTAAAAGCCAAGTTAGAAGCTGAACAGCATGCCCTTCGGCGTTTACGAATGTGTCTTAGAGATGTTTGCAACCGGATTTTATATGATAAAAGGTTTACTGTCTTCCATTACCCTGTTCTTGATGAGGATGCTCCCAATTACCGCTCAGTCGTCCAGAACCCAATGGACATGGCTACATTGCTTCAACGTGTTGACTCTGGACAGTATATTACATGTTCAGCATTTATTCAAGATGTCGATCTTATTGTTTCCAATGCGAAGGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGCAGAGCTTATGAGCTTCGCGATGCTGTCCATGGAATGCTGACACAGATGGATCCTGCACTGGTTGCATTCTGTGATAATATAGCTGCCCAAGGTGGCCCGTTGAACGTGCCAGATGAACTTGGGGGAACTGTGTTTCCATCTGCCCCAGCTGTGCAGATGGGAACTGTTACTCGAGCTAGTGCTCGATTGCGTAATGTCCAGCCAGAGGTTGACTTCAATAGAAGTTACGAGGCATTAAAACGCCCAAAGAAGAATATGGATGCTGCTCATCATGCAG 3397 45.33 MLNFGTSEVKVSSLLIDSGSWDENKPGIFLRSRATPGQSAATSSSDVVFRSTHGEFYQSNLALTSPMYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLRPKKQPMPTANAVPVEKNLRRSQRQKRRRTNFSGYTDSEDEDLMSPKYKMLRSQRANNSNKNVFSSPKHKKSMENRPTPRREGLRPRHSRLVSRDRLNSESDDEQGSSEDKGSQDEIENGNDMEDNDVDDIQNDDEGEPEPEDEGEEDGDDEGGEEEQEGRRRYDLRNRPDARRLSIGEGKPRPRSPRRVLHQGMGTKVGRDVRRGGSRVHKRRMARIEDSDDSLLVDELDQAPGIPWARGGSRSGPPWLFGGLDMHGTASWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPVQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILTIHTRKWKNPPSEELRSELAATCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVESVTVEKYHFVEAMSTITPAAHRGAVVHSRPLSSVVAPCLQRHLHKAMIFLSDAFPLAASSEFAKLSMLSFGSAIPLVCRPRLLLCGGEDVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHRWWETADQQLRAVLLTLLEELPSDLPILLLGTSLVSLVEVDEKASMIFPDRGIYQVSPPSSEDKSLFFTHLIEAASSVLLEGMDKKVQVSGTLPELPKAPVVASGPKVSELKAKLEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVLDEDAPNYRSVVQNPMDMATLLQRVDSGQYITCSAFIQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVHGMLTQMDPALVAFCDNIAAQGGPLNVPDELGGTVFPSAPAVQMGTVTRASARLRNVQPEVDFNRSYEALKRPKKNMDAAHHA 1132
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13411424 13423404 - CaPI482276_08g008950.1 Cam08g0895 132946

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0895 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 903 IPR027417 -
Cam08g0895 1132 MobiDBLite consensus disorder prediction 244 280 - -
Cam08g0895 1132 MobiDBLite consensus disorder prediction 155 173 - -
Cam08g0895 1132 SMART AAA_5 468 609 IPR003593 GO:0016887(InterPro)
Cam08g0895 1132 SUPERFAMILY Bromodomain 949 1061 IPR036427 GO:0005515(InterPro)
Cam08g0895 1132 FunFam ATPase family AAA domain-containing protein 2B 608 693 - -
Cam08g0895 1132 Gene3D - 943 1071 IPR036427 GO:0005515(InterPro)
Cam08g0895 1132 Pfam ATPase family associated with various cellular activities (AAA) 472 607 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam08g0895 1132 SMART bromo_6 951 1058 IPR001487 GO:0005515(InterPro)
Cam08g0895 1132 MobiDBLite consensus disorder prediction 124 336 - -
Cam08g0895 1132 Pfam AAA+ lid domain 634 671 IPR041569 -
Cam08g0895 1132 Gene3D - 430 700 IPR027417 -
Cam08g0895 1132 FunFam ATPase family, AAA domain-containing 2 430 613 - -
Cam08g0895 1132 MobiDBLite consensus disorder prediction 281 311 - -
Cam08g0895 1132 FunFam ATPase family AAA domain-containing protein 943 1071 - -
Cam08g0895 1132 MobiDBLite consensus disorder prediction 192 243 - -
Cam08g0895 1132 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 694 IPR027417 -
Cam08g0895 1132 Gene3D - 608 693 - -
Cam08g0895 1132 PRINTS Bromodomain signature 999 1017 IPR001487 GO:0005515(InterPro)
Cam08g0895 1132 PRINTS Bromodomain signature 1017 1036 IPR001487 GO:0005515(InterPro)
Cam08g0895 1132 PRINTS Bromodomain signature 983 999 IPR001487 GO:0005515(InterPro)
Cam08g0895 1132 PANTHER AAA DOMAIN-CONTAINING 123 1121 IPR045199 GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0016887(PANTHER)|GO:0042393(PANTHER)|GO:0045944(PANTHER)
Cam08g0895 1132 Pfam Bromodomain 963 1032 IPR001487 GO:0005515(InterPro)
Cam08g0895 1132 ProSiteProfiles Bromodomain profile. 974 1036 IPR001487 GO:0005515(InterPro)
Cam08g0895 1132 ProSitePatterns AAA-protein family signature. 577 595 IPR003960 GO:0005524(InterPro)|GO:0016887(InterPro)
Cam08g0895 1132 MobiDBLite consensus disorder prediction 70 97 - -
Cam08g0895 1132 MobiDBLite consensus disorder prediction 176 191 - -
Cam08g0895 1132 CDD Bromo_AAA 951 1061 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0895 K22531 - - csv:101203476 1929.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0895 Cam-Chr8:13411424 Cam09g0335 Cam-Chr9:3704240 9.30E-43 dispersed
Cam08g0895 Cam-Chr8:13411424 Cam10g1984 Cam-Chr10:33762594 1.70E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33