Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0918 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCAATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACTGGTAGTGTGCCTTATTCAATTTCTCAAATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACTGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTCGAAGATATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGCAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAAATTTGTACAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTCCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCAGAATGCCTTAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAGTTGTTGACGGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2115 40.71 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLNGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEDIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGNLYNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14075535 14084420 - CaPI482276_08g009180.1 Cam08g0918 132969

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0918 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 488 692 - -
Cam08g0918 704 Gene3D Transferase(Phosphotransferase) domain 1 488 701 - -
Cam08g0918 704 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cam08g0918 704 PANTHER LEUCINE RICH REPEAT KINASE 2 268 680 IPR051420 -
Cam08g0918 704 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Cam08g0918 704 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515(InterPro)
Cam08g0918 704 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 376 487 - -
Cam08g0918 704 MobiDBLite consensus disorder prediction 235 269 - -
Cam08g0918 704 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 25 252 - -
Cam08g0918 704 SUPERFAMILY Protein kinase-like (PK-like) 390 678 IPR011009 -
Cam08g0918 704 MobiDBLite consensus disorder prediction 307 350 - -
Cam08g0918 704 ProSiteProfiles Protein kinase domain profile. 410 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cam08g0918 704 SUPERFAMILY L domain-like 27 236 - -
Cam08g0918 704 MobiDBLite consensus disorder prediction 315 350 - -
Cam08g0918 704 Pfam Leucine Rich Repeat 118 137 IPR001611 GO:0005515(InterPro)
Cam08g0918 704 Gene3D Phosphorylase Kinase; domain 1 374 487 - -
Cam08g0918 704 Pfam Protein kinase domain 413 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0918 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam01g0991 Cam-Chr1:13669430 Cam08g0918 Cam-Chr8:14075535 1.30E-135 dispersed
Cam08g0918 Cam-Chr8:14075535 Cam09g0143 Cam-Chr9:2246534 1.80E-137 dispersed
Cam08g0918 Cam-Chr8:14075535 Cam07g1140 Cam-Chr7:25833262 7.80E-165 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam01g0991 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.0e-85 312.4
Cam10g1702 . 9 532 Strubbelig Receptor Gene Family AT5G06820 56.0 2.3e-159 559.7
Cam02g0136 . 34 787 Strubbelig Receptor Gene Family AT4G03390 62.5 1.7e-205 713.0
Cam01g2335 . 17 709 Strubbelig Receptor Gene Family AT4G03390 51.7 1.8e-141 500.4
Cam09g0143 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.4 7.5e-92 335.5
Cam08g0918 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.7 1.1e-147 520.8
Cam08g0918 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.4 2.7e-194 675.6
Cam07g1140 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.6 3.6e-146 515.8
Cam09g0143 . 24 690 Strubbelig Receptor Gene Family AT1G78980 50.2 1.3e-122 437.6
Cam07g1140 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.1 1.0e-204 710.3
Cam09g0143 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.7 1.3e-186 650.2
Cam08g0918 . 20 690 Strubbelig Receptor Gene Family AT1G53730 50.1 4.9e-154 542.0
Cam01g0991 . 17 689 Strubbelig Receptor Gene Family AT1G53730 50.9 3.4e-147 519.2
Cam07g1140 . 11 714 Strubbelig Receptor Gene Family AT3G14350 56.7 4.8e-183 638.3
Cam09g0143 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.4 1.6e-167 586.6
Cam01g0991 . 138 711 Strubbelig Receptor Gene Family AT4G22130 63.0 1.3e-178 623.2
Cam07g1140 . 398 724 Strubbelig Receptor Gene Family AT4G22130 64.1 2.7e-120 429.5
Cam09g0143 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.6 6.3e-117 418.3
Cam02g0136 . 484 789 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cam08g0918 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 1.2e-99 360.9
Cam01g2335 . 442 709 Strubbelig Receptor Gene Family AT4G22130 60.0 1.3e-90 330.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85356 PF00069 Pkinase 2.30E-43 CL0016 Cam PK