Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0929 ATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCAATCAAAGTGATCATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGGCTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCCCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACCTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA 654 41.59 MSSNHLEMMSNHFTVENSNQSDHQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGPEIMQATNGCDDIQEMQRIVPREEGYGGPSYHHSTFPPL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14366571 14372197 + CaPI482276_08g009290.1 Cam08g0929 132980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0929 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 168 IPR036638 GO:0046983(InterPro)
Cam08g0929 217 CDD bHLH_AtBPE_like 90 174 - -
Cam08g0929 217 Gene3D - 97 168 IPR036638 GO:0046983(InterPro)
Cam08g0929 217 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 75 176 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cam08g0929 217 MobiDBLite consensus disorder prediction 68 90 - -
Cam08g0929 217 SMART finulus 106 156 IPR011598 GO:0046983(InterPro)
Cam08g0929 217 Pfam Helix-loop-helix DNA-binding domain 104 151 IPR011598 GO:0046983(InterPro)
Cam08g0929 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 150 IPR011598 GO:0046983(InterPro)
Cam08g0929 217 MobiDBLite consensus disorder prediction 64 90 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam04g1143 Cam-Chr4:25502305 Cam08g0929 Cam-Chr8:14366571 1.40E-37 dispersed
Cam05g1318 Cam-Chr5:13835428 Cam08g0929 Cam-Chr8:14366571 1.40E-31 dispersed
Cam08g0929 Cam-Chr8:14366571 Cam09g0835 Cam-Chr9:8577032 1.10E-27 dispersed
Cam08g0929 Cam-Chr8:14366571 Cam06g1615 Cam-Chr6:27616106 3.00E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52385 PF00010 HLH 6.40E-06 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0929 - - - 0.0