Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0944 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGTGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCTCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCGCTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAAGTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 54.36 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14803287 14806309 + CaPI482276_08g009440.1 Cam08g0944 132995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0944 370 MobiDBLite consensus disorder prediction 126 146 - -
Cam08g0944 370 MobiDBLite consensus disorder prediction 346 370 - -
Cam08g0944 370 MobiDBLite consensus disorder prediction 126 212 - -
Cam08g0944 370 MobiDBLite consensus disorder prediction 327 370 - -
Cam08g0944 370 MobiDBLite consensus disorder prediction 168 193 - -
Cam08g0944 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cam08g0944 370 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677(InterPro)
Cam08g0944 370 MobiDBLite consensus disorder prediction 194 212 - -
Cam08g0944 370 FunFam Myb family transcription factor 207 265 - -
Cam08g0944 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cam08g0944 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 342 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0944 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cam08g0944 370 Gene3D - 207 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0944 Cam-Chr8:14803287 Cam11g0282 Cam-Chr11:4281503 2.60E-42 dispersed
Cam05g1705 Cam-Chr5:25392828 Cam08g0944 Cam-Chr8:14803287 2.50E-32 transposed
Cam05g2500 Cam-Chr5:32823814 Cam08g0944 Cam-Chr8:14803287 7.90E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52386 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0944 - - - 0.0