Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0948 ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGACGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGGTTACGTACAGAGAGTGGAGAGAGAAAGTGATATCTGTTTTACCTCTGGAAGAAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCCACCTACCATACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAACGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTTGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCGATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGAAAAGTGGAAAACAATACCCAACAGATGAACCAGTAGCTGATCTTAATGATAATAAAGGAAGTACTTTGGCCTAA 1635 46.18 MFNNGLSLNAIVSLCKVEEDEEEKGKDEKRFENGGLDVGDRNEGYVQRVERESDICFTSGRSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIHLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWKSGKQYPTDEPVADLNDNKGSTLA 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14906620 14911349 + CaPI482276_08g009480.1 Cam08g0948 132999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0948 544 CDD bZIP_HBP1b-like 241 293 - -
Cam08g0948 544 Gene3D - 240 289 - -
Cam08g0948 544 PANTHER TRANSCRIPTION FACTOR TGA9 197 523 - -
Cam08g0948 544 Coils Coil 260 287 - -
Cam08g0948 544 Pfam Seed dormancy control 325 398 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cam08g0948 544 FunFam BZIP family transcription factor 240 289 - -
Cam08g0948 544 SMART brlzneu 237 308 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0948 544 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 244 259 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0948 544 Pfam bZIP transcription factor 240 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0948 544 SUPERFAMILY Leucine zipper domain 241 284 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0948 544 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 239 283 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0948 544 ProSiteProfiles DOG1 domain profile. 307 523 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam08g0948 Cam-Chr8:14906620 Cam08g1522 Cam-Chr8:21424077 3.40E-115 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52387 PF14144 DOG1 2.30E-29 No_clan Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0948 K14431 - csv:101210308 831.632