Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0978 ATGGAGGTCGGGAGAGTCCAGGACATCGCTTCCTCGGTGTTTTTCTCCAACACTCTCCCCGCCGAGTTCATCCGTCCGGAGACAGAGCAGCCCGGAATCACAACCGTCAAAGGCCACACCCTCGCCGTTCCTGTCATCGATTTCACCAACCCAGATGACGACTCTATTCTCCGAGCCATCGACGACGCCTCTCGCAATTGGGGCATGTTTCAAATCGTCAACCATCAGATCCCAAATGAAGCAATAACCCATTTGCAGGCCGTCGGTAAGAAATTCTTCGAGCTCCCTCCGGAGGAGAAAGAGGTTTACGCCAAACCCCCTGATTCCAAATCCGTCGAAGGCTATGGAACTAAGCTCCAGAAGGAAATCGATGGAAAGAAGGGTTGGGTCGACCATTTATTCCATATCATTTGGCCTCCTTCTGCCATTAACTACAATTTCTGGCCCAAAAATCCCCATTCCTACAGGGCAGCGAATGAGGAGTACAGAAAGCACTTACATGGGGTTGTGGAGAAGCTATTCAGATGCCTCTCGCTAGGGCTGGGGCTTGAAGGGCACGAGCTAAAAGAGCGAGCCGGTGGAGATAAATTGGTGTATTTACTGAAAATCAATTACTACCCGCCATGTCCACGCCCTGATTTGGCTCTTGGAGTCCCTGCTCATACCGACATGTCGGCCATTACGATTCTTGTGCCGAATGAAGTTCAAGGACTCCAAGCGTTTAGAGATGGGAAGTGGTACGACGTCAGTTACATCCCTAATGCCCTCGTCATCCACATTGGGGATCAAATTGAGATTCTGAGTAATGGAAAGTATAAGAGTGTGTTTCATAGGACGACTGTGAACAAGGAGAAGACGAGGATATCGTGGCCGGTGTTTTTGGAGCCGCCGCCGGAGTTTGAAGTTGGGCCTCATCCGAAATTGATCGATGAGGAAAATCCGCCAAAATATAAGACGAAGAAGTACAGTGAATATGCATATTGTAAGCTCAACAAGATTCCCCAGTGA 1008 49.4 MEVGRVQDIASSVFFSNTLPAEFIRPETEQPGITTVKGHTLAVPVIDFTNPDDDSILRAIDDASRNWGMFQIVNHQIPNEAITHLQAVGKKFFELPPEEKEVYAKPPDSKSVEGYGTKLQKEIDGKKGWVDHLFHIIWPPSAINYNFWPKNPHSYRAANEEYRKHLHGVVEKLFRCLSLGLGLEGHELKERAGGDKLVYLLKINYYPPCPRPDLALGVPAHTDMSAITILVPNEVQGLQAFRDGKWYDVSYIPNALVIHIGDQIEILSNGKYKSVFHRTTVNKEKTRISWPVFLEPPPEFEVGPHPKLIDEENPPKYKTKKYSEYAYCKLNKIPQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15730072 15731263 - CaPI482276_08g009780.1 Cam08g0978 133029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0978 335 SUPERFAMILY Clavaminate synthase-like 16 333 - -
Cam08g0978 335 Pfam 2OG-Fe(II) oxygenase superfamily 200 296 IPR044861 -
Cam08g0978 335 Pfam non-haem dioxygenase in morphine synthesis N-terminal 43 151 IPR026992 -
Cam08g0978 335 Gene3D - 1 333 IPR027443 -
Cam08g0978 335 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 196 296 IPR005123 -
Cam08g0978 335 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 31 329 IPR050295 -
Cam08g0978 335 FunFam Flavonol synthase 1 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0978 K05278 - - csv:101219245 615.535
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam07g1454 Cam-Chr7:29187361 Cam08g0978 Cam-Chr8:15730072 1.50E-27 dispersed
Cam08g0978 Cam-Chr8:15730072 Cam10g2174 Cam-Chr10:35204814 1.10E-52 dispersed
Cam08g0978 Cam-Chr8:15730072 Cam07g0430 Cam-Chr7:5828703 2.70E-59 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g305 . . . . . Bpe04g00480 . . Cmo04g02456 . . . . . . . . . . . . . . . Cla08g00561 Cam08g0978 Cec08g0568 Cco08g0677 Clacu08g0685 . Cre08g0500 . . . . . . . . . Blo18g00190 . Bda01g01416 . . Bma01g00830 . . . . . . Car04g02274 . Cpe01g02036 . . . . . . . . . . . . . . . Lsi08g00410 . Chy03g00353 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003902 1 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 2 43