Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0990 ATGGTGAAGAAGGAATTAGCAAATGATGACATTCATTCAACAACACTCTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGTTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCGACGGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCTGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTCTCTTCAAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATCCAAAGAGTTGCGGCCGAAGCTGCAGCTAACACCGCCTTTTTTGATGGCAATGTCGACAATAATACGACGAGATCTAACGATGTTCTGCCATCGTCGCCACTGCCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTGTCTCGTCGACGTCGAATAATGATTCGTTTATGATGATGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGAACTCTTTTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA 636 42.61 MVKKELANDDIHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTTRSNDVLPSSPLPSSSSSSSSSSSVSSTSNNDSFMMMEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15957760 15958395 - CaPI482276_08g009900.1 Cam08g0990 133041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0990 211 MobiDBLite consensus disorder prediction 131 158 - -
Cam08g0990 211 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 Pfam AP2 domain 22 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 FunFam ethylene-responsive transcription factor ERF014-like 21 81 - -
Cam08g0990 211 CDD AP2 21 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cam08g0990 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 162 IPR051032 -
Cam08g0990 211 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam03g1507 Cam-Chr3:30052059 Cam08g0990 Cam-Chr8:15957760 4.00E-21 dispersed
Cam08g0990 Cam-Chr8:15957760 Cam08g2085 Cam-Chr8:26393710 9.60E-18 dispersed
Cam11g1588 Cam-Chr11:28617496 Cam08g0990 Cam-Chr8:15957760 1.50E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
52391 PF00847 AP2 4.00E-12 CL0081 Cam TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0990 - - - 0.0