Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cam08g0990 | ATGGTGAAGAAGGAATTAGCAAATGATGACATTCATTCAACAACACTCTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGTTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCGACGGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCTGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTCTCTTCAAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATCCAAAGAGTTGCGGCCGAAGCTGCAGCTAACACCGCCTTTTTTGATGGCAATGTCGACAATAATACGACGAGATCTAACGATGTTCTGCCATCGTCGCCACTGCCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTGTCTCGTCGACGTCGAATAATGATTCGTTTATGATGATGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGAACTCTTTTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA | 636 | 42.61 | MVKKELANDDIHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTTRSNDVLPSSPLPSSSSSSSSSSSVSSTSNNDSFMMMEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 15957760 | 15958395 | - | CaPI482276_08g009900.1 | Cam08g0990 | 133041 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cam08g0990 | 211 | MobiDBLite | consensus disorder prediction | 131 | 158 | - | - | |
Cam08g0990 | 211 | PRINTS | Ethylene responsive element binding protein signature | 23 | 34 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | PRINTS | Ethylene responsive element binding protein signature | 45 | 61 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | Pfam | AP2 domain | 22 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | FunFam | ethylene-responsive transcription factor ERF014-like | 21 | 81 | - | - | |
Cam08g0990 | 211 | CDD | AP2 | 21 | 81 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | Gene3D | AP2/ERF domain | 21 | 81 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | ProSiteProfiles | AP2/ERF domain profile. | 22 | 79 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | SMART | rav1_2 | 22 | 85 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cam08g0990 | 211 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 162 | IPR051032 | - | |
Cam08g0990 | 211 | SUPERFAMILY | DNA-binding domain | 22 | 81 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cam03g1507 | Cam-Chr3:30052059 | Cam08g0990 | Cam-Chr8:15957760 | 4.00E-21 | dispersed | |
Cam08g0990 | Cam-Chr8:15957760 | Cam08g2085 | Cam-Chr8:26393710 | 9.60E-18 | dispersed | |
Cam11g1588 | Cam-Chr11:28617496 | Cam08g0990 | Cam-Chr8:15957760 | 1.50E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
52391 | PF00847 | AP2 | 4.00E-12 | CL0081 | Cam | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cam08g0990 | - | - | - | 0.0 |