Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g0995 ATGGCGGAGGAAATACAGGACAAAGATGCTCCGAACGAAGAAGCCATGGATGTAGCTGTTGATATAGAGACGAAGATTCATAACGCTATGCGCTCTCGCATCTCCCACTTCAAGGAACAAGCCGACTCTTTAACTTTTGAGGGGGTTAGGAGATTGCTTGAAAAGGACTTGTGTTTGGAGAAGTATGCATTAGATGTGCATAAAAGATATGTCAAGCAGTGTTTGGTGAAGTGCTTAGAAAGTGCTGAGGAAGACAATGCCTCCAAGGATTCTGAGGAGATTGGGAGAAAAAGTGCAAGTAAAGGAGAAGCGGCTGAGTCACTTGAAGGGCATCAGTCCGAGAAGGATGTAAACGAACCTTGCGTGGAATATGAGAACATGGAAGACTCTCCAGTTATGGGCCTTCTCACAGGACGTAAAACAAAAAATGTTGAATCTGATGGAATCAAAGGAACCAAAGACAAAGATGACAAAGATATTCCTAGTGAGAGTACAATTACGGAAGCTATTAGAAAAAGAACTTCTTATCTTAAAGCTAATTCCGAGAAAGTTACTATGGCTGGAGTTCGCCGGCTTCTGGAGGATGACCTTAAACTTACTACAAAAGCTCTCGACAGTTGCAAGAAGTTTATAAGCCAACAAATAGAGAAGATATTGACTTCTTGTGAAGCTGCTGAACAAGTTTCTAATGAAAAGAAAGGTTCTTGTTTGAAAACTCCAAAAAAGGTAAGCAAAGAAAGCTCTCATTCTACGGAAGGGAGCAGTAGTGAGGAGGAAAACGATGAAGTAAAGCCTGGAAAGAAAAATGCAACTAAAGGAAGAATACCGAACTCTAACGAAACAAAAAAGCGGAAAAGGTCTACAATGGAGACTGTCTCTGCCAAGAAGCAAAGCAAGCATGTCCAGCAGACATCAGAGGAGGATAGTGATGGAGGTGGTGAAAATGGCTCTGAAGATGGCCAGTCTGACTCATCCAATGAAAAACCTGTGAAGAAGGAAGTTTCAACTCCTGTCTATGGTAAGCGTGTGGAGCACTTGAAATCGGTTATCAAATCGTGTGGGATGAGTGTTCCTCCAGCGATTTATAAGAAAGTCAAGCAGGCACCTGAAAGCAAACGTGAATCACAACTTATCAAGGAGTTGGAGGGGATACTATCCAAAGAAGGATTGTCTGCTAATCCCTCTGAAAAAGAAATTAAGGAAGTTAAAAAGAAGAAGGAAAGGGCCAAAGAACTTGAAGGCATTGACTTAAGCAATATCGTTTCAAGTTCACGTAGAAGATCCATGACCAGCTATGTAGCACCACCTCCAAAACCGAAAATACCAGTTAAAACTGATGGTGATGATGTTCATGATACTGAGGAGGAGGAGGAGGAGGAGGATGAAGAAGAAGAAGAAGAAGATGACGACGACGACGACGAAGAGGAGGATGGCGAGGAAGAGGATAATGGCGACGTTGATGAAAGCCAAGGCGAAGAATTCAATGAGGATGACAATGAAGATAGTGATTGA 1512 42.33 MAEEIQDKDAPNEEAMDVAVDIETKIHNAMRSRISHFKEQADSLTFEGVRRLLEKDLCLEKYALDVHKRYVKQCLVKCLESAEEDNASKDSEEIGRKSASKGEAAESLEGHQSEKDVNEPCVEYENMEDSPVMGLLTGRKTKNVESDGIKGTKDKDDKDIPSESTITEAIRKRTSYLKANSEKVTMAGVRRLLEDDLKLTTKALDSCKKFISQQIEKILTSCEAAEQVSNEKKGSCLKTPKKVSKESSHSTEGSSSEEENDEVKPGKKNATKGRIPNSNETKKRKRSTMETVSAKKQSKHVQQTSEEDSDGGGENGSEDGQSDSSNEKPVKKEVSTPVYGKRVEHLKSVIKSCGMSVPPAIYKKVKQAPESKRESQLIKELEGILSKEGLSANPSEKEIKEVKKKKERAKELEGIDLSNIVSSSRRRSMTSYVAPPPKPKIPVKTDGDDVHDTEEEEEEEDEEEEEEDDDDDDEEEDGEEEDNGDVDESQGEEFNEDDNEDSD 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16098643 16106145 - CaPI482276_08g009950.1 Cam08g0995 133046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g0995 503 MobiDBLite consensus disorder prediction 85 117 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 393 414 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 140 166 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 143 166 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 277 293 - -
Cam08g0995 503 PANTHER HIRA-INTERACTING PROTEIN 3 1 491 IPR037647 GO:0005634(PANTHER)
Cam08g0995 503 Coils Coil 450 476 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 226 339 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 235 269 - -
Cam08g0995 503 Pfam Histone chaperone domain CHZ 407 435 IPR019098 -
Cam08g0995 503 MobiDBLite consensus disorder prediction 392 503 - -
Cam08g0995 503 MobiDBLite consensus disorder prediction 450 503 - -
Cam08g0995 503 SMART CHZ_2 406 441 IPR019098 -
Cam08g0995 503 MobiDBLite consensus disorder prediction 324 339 - -
Cam08g0995 503 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 160 220 IPR014876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g0995 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g282 . . . . . . . . . Cmo15g00703 . . . . Sed03g0794 . . Bhi04g01926 Tan11g1290 Cmetu03g0298 . Hepe02g2282 . Lcy10g1217 Cla08g00580 Cam08g0995 Cec08g0584 Cco08g0694 Clacu08g0704 . Cre08g0515 . . . Cone20ag0450 . . . Cme03g00572 Blo17g00180 . . . . Bpe14g00380 . Bma02g00220 . . . . . . Car15g00634 . . . . . . . . . . . . . . . . Lsi08g00426 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011404 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 2 1 1 31