Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1004 ATGAGGATTTTGGTGAAGAGAGACTTGATTTTGGGGATTTTGGCGATAAGAGGCGGTTGTATTCCGCGATCTCAGCTGGCCTTCCATGCAGATACAGAACAGACGATTGAGCTCCACAGCGAATCAATGGCGGGAAGGACAGTGTTGAAGGAGAAGAGCAGGGCAGCAAGCTTCTTCTCCGCGACATTAGTGCTTTGGTCAGTCTCTCTATGGTTCGAAATTCTATTCGACCGGCGCTTCGAGCTGCTCTACGTCGTATTCGGAGCTCTGTTCTACCAATCCGCCAATTCGGCCATTCGATTTCTTGTTTCCAAGGATCCTCTCTTAGTCAACACCTCCGTCTCTCTCCTTCATTCCACTATCACCTCTGCTTCAGTGCTGTTTGTTTTGGTGAATCGGTGGCTGAGCTATGGTTCGGAGGGGATGTTTGAGCATTCACAATTGTTTGGAGGAACATGGCCGTGGGCTTATGCAGCTTTGTGCTTCTCATGTGGTTATTTTGCGTATGATCAGTGGGATATGCTGCAATACCAATTATACAGTGGCTGGATCCCTGCGATCTTAGTTCATCATCTGGTTCTTCTCATTTGCTTTACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCATTCTCACTCTCATTTGCGAGATGCATTCTATTTTTCTCCACGTAAGGCGATTACGAAGGATGGCAGGTGTTCGTGACGCTAAGAGCGTTATCGTGAAAGTCGAATGGATTCTCAACTGGCTAACATTCGTTTTCGCAAGGTTTGTTCCACACATTCTCATTACTGCGAAGCTCATCATGGATGCTTCCAAGTTTGATAAAGGCGTCGAGCTGCCGCTTGCACTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTGCTTGGCATTGATCTCTTAAACGCCGTAAGGAAAGAGAGTAATTACCAGAAAACTGATCAATCTCATCATGAATGA 969 46.34 MRILVKRDLILGILAIRGGCIPRSQLAFHADTEQTIELHSESMAGRTVLKEKSRAASFFSATLVLWSVSLWFEILFDRRFELLYVVFGALFYQSANSAIRFLVSKDPLLVNTSVSLLHSTITSASVLFVLVNRWLSYGSEGMFEHSQLFGGTWPWAYAALCFSCGYFAYDQWDMLQYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICEMHSIFLHVRRLRRMAGVRDAKSVIVKVEWILNWLTFVFARFVPHILITAKLIMDASKFDKGVELPLALSGMAGMNLLNALLGIDLLNAVRKESNYQKTDQSHHE 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16181787 16187074 - CaPI482276_08g010040.1 Cam08g1004 133055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1004 322 Pfam TLC domain 111 299 IPR006634 GO:0016020(InterPro)
Cam08g1004 322 PANTHER CT120 PROTEIN 65 317 IPR050846 GO:0005886(PANTHER)|GO:0007009(PANTHER)|GO:0055088(PANTHER)|GO:0055091(PANTHER)|GO:0071709(PANTHER)|GO:0097035(PANTHER)
Cam08g1004 322 SMART lag1_27 104 309 IPR006634 GO:0016020(InterPro)
Cam08g1004 322 ProSiteProfiles TLC domain profile. 104 312 IPR006634 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1004 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g261 . . . . . . . . . Cmo15g00691 . . . . Sed01g3125 . . Bhi04g01915 Tan11g1277 Cmetu03g1464 . Hepe02g2272 . Lcy10g1225 Cla08g00589 Cam08g1004 Cec08g0594 Cco08g0703 Clacu08g0713 . Cre08g0524 . Cone7ag1529 . . . . . Cme03g00559 . . . Bda01g01428 Bpe02g01642 . . . . . . . . . Car15g00624 . . . . . . . . . . . . . . . . Lsi08g00435 . Chy03g00800 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011858 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30