Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cam08g1012 ATGATCTCCTCTGCAAAATTTTTCTCAATTTTCTTCATCGCCATTCACGCCTTCTCACTCTCCTCATCCTCTCCAGTCGGCGGTGATCACGGCGGTTCTCCTCTAATAGCGGGCTGCGGCTTACAACCGCTGCGGATTTCTAATTCTCTCAAGAATAAGAGTATTGGAGCCTTGATGTCTGGATTGGAGTCTCAGAACTGCGAGGTTTGGACGGAGGCTTGCTCTGAGTCGATCCTGAGTTTAGCGAAGCGGCCTGAGGTTGTTGATTGGTTGAAGAAGGTGAGGAGAAGAATCCATGAGAATCCGGAGCTTGCGTTCGAAGAATTCGAAACTAGTCAGTTAGTTCGCGATGAGTTGGATCGGATGGATATTAGCTACGAACATCCGTTGGCTAAAACTGGCGTTCGTGCTTGGATCGGAACTGGCGGACCGCCTTTTGTTGCTCTTAGAGCCGATATGGATGCTCTTCCAATCCAGGAAGCTGTGGAATGGGAGCATAAAAGCAGAGTCCCAGGCAAGATGCATGCTTGTGGGCACGATGCTCACGTTACAATGCTTCTTGGTGCTGCCAAAATTTTAAAGGATCGTGAACATCTCTTGAAGGGGACGGTGATTCTACTATTTCAGCCAGCAGAGGAGGCCGGCAATGGTGCAAAGAGGATGATTGGAGATGGGGCTTTAAGAGACGTTCAAGCCATATTTGCAGTTCATGTTTCTCATGAACATCCCACCGCCGTTATCGGGTCCCGCCCCGGTCCTCTTCTTGCCGGCTGTGGCTTCTTTAGGGCCGTGATTACCGGCAAGAAGGGTCGTGCCGGTTCGCCACACCGGTCCGTCGACCCAGTTCTCGCTGCCTCCGCTGCGGTTGTCAGCTTGCAGGGGATTGTGTCTCGCGAAGCAAATCCTCTAGATTCGCAGGTAGTGTCAGTAACTTCGTTCAATGGAGGAAGTAATCTGGATATGATTCCAGACAGCGTCGTTATTGGAGGGACCTTCAGGGCTTTCTCCAACTCAAGTTTCTACCAAGTTCTTCAAAGAATAGAGGAGGTAATTGTGGAGCAGGCCAGTGTCTATAGATGCTCAGCAATGGTGGATTTCTTTGAAAAAGAATACACCATATACCCACCAACCGTAAATGATGAAAGAATGTATGAACATGTGAAGAAAGTGGCAATTGATCTTCATGGTTCACAAAATTTCAGGCTTGTCCAACCAATGATGGGAGCTGAGGACTTTTCCTTCTACTCAGAGTTCGTTCCTGCAGCCTTCTATTACATAGGAGTCAGGAATGAAACTTTAGGCTCGATCCACACGGGCCACTCCCCCTACTTTATGATCGACGAAGACGTCCTCCCGATCGGTGCTGCAACTCATGCAACCATAGCCGAGAGGTACCTGTACGAGCATGGAGAATGA 1416 49.22 MISSAKFFSIFFIAIHAFSLSSSSPVGGDHGGSPLIAGCGLQPLRISNSLKNKSIGALMSGLESQNCEVWTEACSESILSLAKRPEVVDWLKKVRRRIHENPELAFEEFETSQLVRDELDRMDISYEHPLAKTGVRAWIGTGGPPFVALRADMDALPIQEAVEWEHKSRVPGKMHACGHDAHVTMLLGAAKILKDREHLLKGTVILLFQPAEEAGNGAKRMIGDGALRDVQAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVITGKKGRAGSPHRSVDPVLAASAAVVSLQGIVSREANPLDSQVVSVTSFNGGSNLDMIPDSVVIGGTFRAFSNSSFYQVLQRIEEVIVEQASVYRCSAMVDFFEKEYTIYPPTVNDERMYEHVKKVAIDLHGSQNFRLVQPMMGAEDFSFYSEFVPAAFYYIGVRNETLGSIHTGHSPYFMIDEDVLPIGAATHATIAERYLYEHGE 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16310944 16317804 + CaPI482276_08g010120.1 Cam08g1012 133063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cam08g1012 471 PIRSF Amidohydrol_AmhX 77 470 IPR017439 GO:0016787(InterPro)
Cam08g1012 471 Gene3D Zn peptidases 93 451 - -
Cam08g1012 471 Gene3D - 256 374 - -
Cam08g1012 471 FunFam N-acetyldiaminopimelate deacetylase 256 374 - -
Cam08g1012 471 SUPERFAMILY Bacterial exopeptidase dimerisation domain 257 365 IPR036264 -
Cam08g1012 471 SUPERFAMILY Zn-dependent exopeptidases 86 468 - -
Cam08g1012 471 Pfam Peptidase family M20/M25/M40 148 463 IPR002933 GO:0016787(InterPro)
Cam08g1012 471 CDD M20_IAA_Hyd 91 466 IPR044757 GO:0009850(InterPro)|GO:0016787(InterPro)
Cam08g1012 471 PANTHER PEPTIDASE M20 FAMILY MEMBER 71 469 IPR017439 GO:0005783(PANTHER)|GO:0009694(PANTHER)|GO:0009850(PANTHER)|GO:0010179(PANTHER)|GO:0016787(PANTHER)|GO:0016787(InterPro)
Cam08g1012 471 Pfam Peptidase dimerisation domain 261 355 IPR011650 -
Cam08g1012 471 NCBIfam amidohydrolase 93 454 IPR017439 GO:0016787(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cam08g1012 K21604 - - csv:101215789 855.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cam05g2695 Cam-Chr5:34360758 Cam08g1012 Cam-Chr8:16310944 1.10E-135 dispersed
Cam07g1212 Cam-Chr7:26498913 Cam08g1012 Cam-Chr8:16310944 7.50E-137 dispersed
Cam08g1012 Cam-Chr8:16310944 Cam10g1830 Cam-Chr10:32389010 1.40E-117 dispersed
Cam08g1012 Cam-Chr8:16310944 Cam03g1610 Cam-Chr3:31095780 2.40E-138 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35